miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 123458 0.67 0.941627
Target:  5'- cUGCACCGUCAgGCUGggcguCAGCuCCgUGUCc -3'
miRNA:   3'- cGCGUGGCAGU-CGAU-----GUCG-GG-AUAGc -5'
14503 3' -55.2 NC_003521.1 + 177745 0.67 0.941627
Target:  5'- aGCGCGCCGgcgCAGCUguacggggucGCGGUC--GUCGc -3'
miRNA:   3'- -CGCGUGGCa--GUCGA----------UGUCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 123172 0.67 0.941627
Target:  5'- gGCGCACCGUCuc--GCGGCgCaGUCGc -3'
miRNA:   3'- -CGCGUGGCAGucgaUGUCGgGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 127307 0.68 0.938885
Target:  5'- gGCGCGCCucgauguuggcguugGUCAGCgGCuGCCg-GUCGg -3'
miRNA:   3'- -CGCGUGG---------------CAGUCGaUGuCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 39153 0.68 0.937013
Target:  5'- uGC-CACCGgcggcgCAGCUcGCGGCCCaguUCGu -3'
miRNA:   3'- -CGcGUGGCa-----GUCGA-UGUCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 84549 0.68 0.937013
Target:  5'- cUGCAgCCGcuuguUCAGCgaGCGGCCCUGguUCGg -3'
miRNA:   3'- cGCGU-GGC-----AGUCGa-UGUCGGGAU--AGC- -5'
14503 3' -55.2 NC_003521.1 + 239381 0.68 0.937013
Target:  5'- uGC-CACCGgcggcgCAGCUcGCGGCCCaguUCGu -3'
miRNA:   3'- -CGcGUGGCa-----GUCGA-UGUCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 212015 0.68 0.937013
Target:  5'- aCGCcagguacugGCCGUCGGUgACGGgCUUGUCGg -3'
miRNA:   3'- cGCG---------UGGCAGUCGaUGUCgGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 213729 0.68 0.937013
Target:  5'- uGCGCGCCGUCgagAGCcUGCAcuGCCUg--CGc -3'
miRNA:   3'- -CGCGUGGCAG---UCG-AUGU--CGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 161644 0.68 0.932172
Target:  5'- gGCGcCACCGagcaCGGCUACAGCaUCUgcGUCa -3'
miRNA:   3'- -CGC-GUGGCa---GUCGAUGUCG-GGA--UAGc -5'
14503 3' -55.2 NC_003521.1 + 164443 0.68 0.932172
Target:  5'- aGCGcCACCG-CGGCcGCGGCCgUcacgGUCGc -3'
miRNA:   3'- -CGC-GUGGCaGUCGaUGUCGGgA----UAGC- -5'
14503 3' -55.2 NC_003521.1 + 198220 0.68 0.932172
Target:  5'- cCGUACCGUCAcGCUGucGCgCUAUCa -3'
miRNA:   3'- cGCGUGGCAGU-CGAUguCGgGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 91214 0.68 0.932172
Target:  5'- -aGCGCCGUUucgcgcaugagGGCgUGCAGCCC-GUUGa -3'
miRNA:   3'- cgCGUGGCAG-----------UCG-AUGUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 111248 0.68 0.927105
Target:  5'- gGCGCGgCG-CGGCggaGCAGCCaucGUCGg -3'
miRNA:   3'- -CGCGUgGCaGUCGa--UGUCGGga-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 90130 0.68 0.927105
Target:  5'- cGC-CGCCGgcgCAGCaGCAGCCCa---- -3'
miRNA:   3'- -CGcGUGGCa--GUCGaUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 129980 0.68 0.927105
Target:  5'- cGUGCACCGUC-GCUGCcgcuGCgCCgg-CGg -3'
miRNA:   3'- -CGCGUGGCAGuCGAUGu---CG-GGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 116921 0.68 0.927105
Target:  5'- uCGCuCCGaCAGCUACGGCCUgcUgGg -3'
miRNA:   3'- cGCGuGGCaGUCGAUGUCGGGauAgC- -5'
14503 3' -55.2 NC_003521.1 + 195590 0.68 0.927105
Target:  5'- -gGC-CCGUCuGCcggGCGGCCCU-UCGa -3'
miRNA:   3'- cgCGuGGCAGuCGa--UGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 156394 0.68 0.927105
Target:  5'- aGCGCAucccCCGuUUGGCUGgGGUCCUuUCGg -3'
miRNA:   3'- -CGCGU----GGC-AGUCGAUgUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 104196 0.68 0.926585
Target:  5'- cGCGC-CCGUgGccgauuacgugcuGCUGCAGCCCag-CGa -3'
miRNA:   3'- -CGCGuGGCAgU-------------CGAUGUCGGGauaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.