miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 148626 0.67 0.961374
Target:  5'- cGCGCgGCCGggCGGCgaaaaACGGCCCcgagcUCGg -3'
miRNA:   3'- -CGCG-UGGCa-GUCGa----UGUCGGGau---AGC- -5'
14503 3' -55.2 NC_003521.1 + 165934 0.67 0.957858
Target:  5'- cGC-CACCGUCucgcGCaGCAGCgCCgUGUCGu -3'
miRNA:   3'- -CGcGUGGCAGu---CGaUGUCG-GG-AUAGC- -5'
14503 3' -55.2 NC_003521.1 + 68361 0.67 0.957858
Target:  5'- gGCGCACCG-CuGC--CGGCCCUGc-- -3'
miRNA:   3'- -CGCGUGGCaGuCGauGUCGGGAUagc -5'
14503 3' -55.2 NC_003521.1 + 208694 0.67 0.957858
Target:  5'- gGUGCACCG-CGcccGCUACcuGCCCgagAUCa -3'
miRNA:   3'- -CGCGUGGCaGU---CGAUGu-CGGGa--UAGc -5'
14503 3' -55.2 NC_003521.1 + 202621 0.67 0.957858
Target:  5'- gGCGcCAUCGUCcGCUACAucGUcgCCUGUCa -3'
miRNA:   3'- -CGC-GUGGCAGuCGAUGU--CG--GGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 185076 0.67 0.954128
Target:  5'- cGCGC-CUGUC-GCUGCcGCCCgcgCGc -3'
miRNA:   3'- -CGCGuGGCAGuCGAUGuCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 123989 0.67 0.954128
Target:  5'- gGCG-GCCGUCAggucuggaaaccGCUGCAGCaCCcaGUCGg -3'
miRNA:   3'- -CGCgUGGCAGU------------CGAUGUCG-GGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 196753 0.67 0.954128
Target:  5'- cUGCACCGUCuGCUGCcccGGCCggcgCGa -3'
miRNA:   3'- cGCGUGGCAGuCGAUG---UCGGgauaGC- -5'
14503 3' -55.2 NC_003521.1 + 40806 0.67 0.952967
Target:  5'- -gGCGCgGUCAGCUAUucgccucggggcggGGCCCg--CGc -3'
miRNA:   3'- cgCGUGgCAGUCGAUG--------------UCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 126720 0.67 0.950182
Target:  5'- uGgGCGCCGUCAccGCacaGCAGCCgUGUa- -3'
miRNA:   3'- -CgCGUGGCAGU--CGa--UGUCGGgAUAgc -5'
14503 3' -55.2 NC_003521.1 + 138048 0.67 0.950182
Target:  5'- -gGCGCCGUCAucGC-GCAGCCgCUGcCGc -3'
miRNA:   3'- cgCGUGGCAGU--CGaUGUCGG-GAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 93739 0.67 0.950182
Target:  5'- cGCGUgaGCCGUCGGCcgaUACgaAGCCCggcUCu -3'
miRNA:   3'- -CGCG--UGGCAGUCG---AUG--UCGGGau-AGc -5'
14503 3' -55.2 NC_003521.1 + 184328 0.67 0.950182
Target:  5'- cCGCgGCCGUCAGCcGCAGUacugCCUcuUCGg -3'
miRNA:   3'- cGCG-UGGCAGUCGaUGUCG----GGAu-AGC- -5'
14503 3' -55.2 NC_003521.1 + 59978 0.67 0.950182
Target:  5'- cCGCGaCGUCAGCUAcCGGCUCU-UCa -3'
miRNA:   3'- cGCGUgGCAGUCGAU-GUCGGGAuAGc -5'
14503 3' -55.2 NC_003521.1 + 94135 0.67 0.950182
Target:  5'- aGCGCACCGUgCucagggAGCUGCGGUCggcuUCGu -3'
miRNA:   3'- -CGCGUGGCA-G------UCGAUGUCGGgau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 156002 0.67 0.950182
Target:  5'- gGCGCugCGcgAGCU--GGCCCgUAUCGa -3'
miRNA:   3'- -CGCGugGCagUCGAugUCGGG-AUAGC- -5'
14503 3' -55.2 NC_003521.1 + 137742 0.67 0.946016
Target:  5'- uCGCAUCccCAGCaGCAGCCCUcgCc -3'
miRNA:   3'- cGCGUGGcaGUCGaUGUCGGGAuaGc -5'
14503 3' -55.2 NC_003521.1 + 40335 0.67 0.946016
Target:  5'- uGCGCGCCGcCAGUU-UGGCCaggAUCa -3'
miRNA:   3'- -CGCGUGGCaGUCGAuGUCGGga-UAGc -5'
14503 3' -55.2 NC_003521.1 + 227611 0.67 0.946016
Target:  5'- uGgGCGCCgGUCGGCccuccaacacgGCGGCCCgagCGg -3'
miRNA:   3'- -CgCGUGG-CAGUCGa----------UGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 72170 0.67 0.946016
Target:  5'- -gGCGCCGUCGGCau--GCCC--UCGa -3'
miRNA:   3'- cgCGUGGCAGUCGauguCGGGauAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.