Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 3' | -55.2 | NC_003521.1 | + | 193383 | 0.66 | 0.970691 |
Target: 5'- aGUGCGgCGccCGGCUGCAuguGCCCUGgccCGa -3' miRNA: 3'- -CGCGUgGCa-GUCGAUGU---CGGGAUa--GC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 196593 | 0.66 | 0.970691 |
Target: 5'- cGCGCACgGcggcaAGCUugaGCAGCCC-GUUGa -3' miRNA: 3'- -CGCGUGgCag---UCGA---UGUCGGGaUAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 164293 | 0.66 | 0.970691 |
Target: 5'- cGCGgGCUGaCGGCgcaGGCCCUgguGUCGc -3' miRNA: 3'- -CGCgUGGCaGUCGaugUCGGGA---UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 191009 | 0.66 | 0.970691 |
Target: 5'- gGCGCACUGcaCGGCgccCAGCCau-UCGg -3' miRNA: 3'- -CGCGUGGCa-GUCGau-GUCGGgauAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 71165 | 0.66 | 0.970691 |
Target: 5'- aCGCACUGUCuGUUgaacgGCAGCCuCUA-CGa -3' miRNA: 3'- cGCGUGGCAGuCGA-----UGUCGG-GAUaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 194562 | 0.66 | 0.970691 |
Target: 5'- gGCGCcUCGUCgaaauAGCUugGGCCgCUgcccAUCGg -3' miRNA: 3'- -CGCGuGGCAG-----UCGAugUCGG-GA----UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 85313 | 0.66 | 0.970691 |
Target: 5'- aCGuCGCCGUC-GCUcCAGCCUUGgcccgCGg -3' miRNA: 3'- cGC-GUGGCAGuCGAuGUCGGGAUa----GC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 108840 | 0.66 | 0.968972 |
Target: 5'- uGCGCAgCucCAGCUgcgugaacacgcgguGCAGCCCguaGUCGa -3' miRNA: 3'- -CGCGUgGcaGUCGA---------------UGUCGGGa--UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 131373 | 0.66 | 0.967786 |
Target: 5'- cGCGCccauacccgagACCGU--GCccACGGCCCUGUCu -3' miRNA: 3'- -CGCG-----------UGGCAguCGa-UGUCGGGAUAGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 88486 | 0.66 | 0.967786 |
Target: 5'- -aGCAgCGUCGGCgcgGGCCCgaacgaGUCGa -3' miRNA: 3'- cgCGUgGCAGUCGaugUCGGGa-----UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 70909 | 0.66 | 0.967484 |
Target: 5'- aGCGCcgucagaGCCGUCAGCgcCAGCaggGUCc -3' miRNA: 3'- -CGCG-------UGGCAGUCGauGUCGggaUAGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 104109 | 0.66 | 0.964682 |
Target: 5'- gGCGCGCUGcCAGUccucgGCGGCguCCUGcUCGg -3' miRNA: 3'- -CGCGUGGCaGUCGa----UGUCG--GGAU-AGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 223421 | 0.66 | 0.964682 |
Target: 5'- gGCGCGgCGUCaaAGCUuaauauagggaGCGGuCCCUcUCGa -3' miRNA: 3'- -CGCGUgGCAG--UCGA-----------UGUC-GGGAuAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 84895 | 0.66 | 0.964682 |
Target: 5'- gGCGCgaguagGCCGUCAGCgccCGGUCCa---- -3' miRNA: 3'- -CGCG------UGGCAGUCGau-GUCGGGauagc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 114953 | 0.66 | 0.964682 |
Target: 5'- cGCGCAgCGgcggCuGCUGCGGCgucagucgCCUGUUGc -3' miRNA: 3'- -CGCGUgGCa---GuCGAUGUCG--------GGAUAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 143839 | 0.66 | 0.964682 |
Target: 5'- uGCGCGCCGcccUCuGCgacUACAGCCUcagCGa -3' miRNA: 3'- -CGCGUGGC---AGuCG---AUGUCGGGauaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 187638 | 0.66 | 0.964037 |
Target: 5'- cGCGCGCCGcuggccaucuucaUCGGCgaggGCGGCCgcguguaCUGUUa -3' miRNA: 3'- -CGCGUGGC-------------AGUCGa---UGUCGG-------GAUAGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 48610 | 0.66 | 0.963384 |
Target: 5'- cGUGCACCGUCAGCacgcacgcggauaGCAGCgCgagCa -3' miRNA: 3'- -CGCGUGGCAGUCGa------------UGUCGgGauaGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 176768 | 0.67 | 0.961374 |
Target: 5'- -aGCACCGUCAGgucguugagcacCUcCAGCaCCUgGUCGa -3' miRNA: 3'- cgCGUGGCAGUC------------GAuGUCG-GGA-UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 148626 | 0.67 | 0.961374 |
Target: 5'- cGCGCgGCCGggCGGCgaaaaACGGCCCcgagcUCGg -3' miRNA: 3'- -CGCG-UGGCa-GUCGa----UGUCGGGau---AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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