Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 3' | -55.2 | NC_003521.1 | + | 74564 | 0.71 | 0.799431 |
Target: 5'- uGCGCGugcCCGUgAGC-ACGGCCCgcUCGc -3' miRNA: 3'- -CGCGU---GGCAgUCGaUGUCGGGauAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 148858 | 0.71 | 0.816625 |
Target: 5'- cGUGCACCGcgcCAGCUACgccAGCCUggccUCGg -3' miRNA: 3'- -CGCGUGGCa--GUCGAUG---UCGGGau--AGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 135359 | 0.71 | 0.816625 |
Target: 5'- cGCGCGCCGUCuccgcggcGGUUAUcGCCCg--CGg -3' miRNA: 3'- -CGCGUGGCAG--------UCGAUGuCGGGauaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 114836 | 0.71 | 0.824987 |
Target: 5'- cGCGCACCGugcUCAuGCUGC-GCCUUAgCGu -3' miRNA: 3'- -CGCGUGGC---AGU-CGAUGuCGGGAUaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 45542 | 0.71 | 0.828285 |
Target: 5'- gGCGCcCCGUCAGCggcgGCgaauggugagcguggAGCCCUucUCGc -3' miRNA: 3'- -CGCGuGGCAGUCGa---UG---------------UCGGGAu-AGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 74456 | 0.71 | 0.833181 |
Target: 5'- uGCGCACCGuguUCAGCgaGCAcGUCCUGggcuUCGa -3' miRNA: 3'- -CGCGUGGC---AGUCGa-UGU-CGGGAU----AGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 76935 | 0.71 | 0.833181 |
Target: 5'- aCGCACCGUCGGC-ACcuGCCUccGUCGc -3' miRNA: 3'- cGCGUGGCAGUCGaUGu-CGGGa-UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 153415 | 0.71 | 0.833181 |
Target: 5'- gGUGCGCCaccggcgugGUCAGCaGCAGCCg-GUCGc -3' miRNA: 3'- -CGCGUGG---------CAGUCGaUGUCGGgaUAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 152794 | 0.7 | 0.848266 |
Target: 5'- uGCGCACCGccUCGGUcaccggcagguggUACAGCUCggcGUCGc -3' miRNA: 3'- -CGCGUGGC--AGUCG-------------AUGUCGGGa--UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 156367 | 0.7 | 0.849042 |
Target: 5'- aGCGCuACCGUCucCUGCAGCgCCUGa-- -3' miRNA: 3'- -CGCG-UGGCAGucGAUGUCG-GGAUagc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 44360 | 0.7 | 0.849042 |
Target: 5'- aCGCGCUGg-GGCUGCGGCCCa---- -3' miRNA: 3'- cGCGUGGCagUCGAUGUCGGGauagc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 48438 | 0.7 | 0.856695 |
Target: 5'- -aGCACCGUCAGCUGCugaAGUCgcGUCc -3' miRNA: 3'- cgCGUGGCAGUCGAUG---UCGGgaUAGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 226688 | 0.7 | 0.864154 |
Target: 5'- gGCGCAaCGUCAcGUgcCAGCCCU-UCGg -3' miRNA: 3'- -CGCGUgGCAGU-CGauGUCGGGAuAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 209926 | 0.7 | 0.864154 |
Target: 5'- uCGCcuGCCGcaguUCAGCU-CGGCCCUcUCGg -3' miRNA: 3'- cGCG--UGGC----AGUCGAuGUCGGGAuAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 220950 | 0.7 | 0.870697 |
Target: 5'- aGCGCcgacgcgGCCGUCAgcagggagcGCUGCAGCUCcacGUCGc -3' miRNA: 3'- -CGCG-------UGGCAGU---------CGAUGUCGGGa--UAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 74352 | 0.69 | 0.885317 |
Target: 5'- gGCGCuGCUGcgCGGCUACGGCCagugCGg -3' miRNA: 3'- -CGCG-UGGCa-GUCGAUGUCGGgauaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 44488 | 0.69 | 0.891951 |
Target: 5'- aCGCGCUGgaaaUCgAGCUGCAGCCgCcGUCGu -3' miRNA: 3'- cGCGUGGC----AG-UCGAUGUCGG-GaUAGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 75548 | 0.69 | 0.891951 |
Target: 5'- aGCgGCGCCGgcggCGGCUACGccagcGCCCUccuGUCc -3' miRNA: 3'- -CG-CGUGGCa---GUCGAUGU-----CGGGA---UAGc -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 166643 | 0.69 | 0.904564 |
Target: 5'- cGCGCGCCGggcgccgCGGCgcaGCGGCCag--CGg -3' miRNA: 3'- -CGCGUGGCa------GUCGa--UGUCGGgauaGC- -5' |
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14503 | 3' | -55.2 | NC_003521.1 | + | 187455 | 0.69 | 0.904564 |
Target: 5'- gGUGCGCCGcgUCAGCgggACGGUgCUgcacAUCGg -3' miRNA: 3'- -CGCGUGGC--AGUCGa--UGUCGgGA----UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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