miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 74564 0.71 0.799431
Target:  5'- uGCGCGugcCCGUgAGC-ACGGCCCgcUCGc -3'
miRNA:   3'- -CGCGU---GGCAgUCGaUGUCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 148858 0.71 0.816625
Target:  5'- cGUGCACCGcgcCAGCUACgccAGCCUggccUCGg -3'
miRNA:   3'- -CGCGUGGCa--GUCGAUG---UCGGGau--AGC- -5'
14503 3' -55.2 NC_003521.1 + 135359 0.71 0.816625
Target:  5'- cGCGCGCCGUCuccgcggcGGUUAUcGCCCg--CGg -3'
miRNA:   3'- -CGCGUGGCAG--------UCGAUGuCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 114836 0.71 0.824987
Target:  5'- cGCGCACCGugcUCAuGCUGC-GCCUUAgCGu -3'
miRNA:   3'- -CGCGUGGC---AGU-CGAUGuCGGGAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 45542 0.71 0.828285
Target:  5'- gGCGCcCCGUCAGCggcgGCgaauggugagcguggAGCCCUucUCGc -3'
miRNA:   3'- -CGCGuGGCAGUCGa---UG---------------UCGGGAu-AGC- -5'
14503 3' -55.2 NC_003521.1 + 74456 0.71 0.833181
Target:  5'- uGCGCACCGuguUCAGCgaGCAcGUCCUGggcuUCGa -3'
miRNA:   3'- -CGCGUGGC---AGUCGa-UGU-CGGGAU----AGC- -5'
14503 3' -55.2 NC_003521.1 + 76935 0.71 0.833181
Target:  5'- aCGCACCGUCGGC-ACcuGCCUccGUCGc -3'
miRNA:   3'- cGCGUGGCAGUCGaUGu-CGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 153415 0.71 0.833181
Target:  5'- gGUGCGCCaccggcgugGUCAGCaGCAGCCg-GUCGc -3'
miRNA:   3'- -CGCGUGG---------CAGUCGaUGUCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 152794 0.7 0.848266
Target:  5'- uGCGCACCGccUCGGUcaccggcagguggUACAGCUCggcGUCGc -3'
miRNA:   3'- -CGCGUGGC--AGUCG-------------AUGUCGGGa--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 156367 0.7 0.849042
Target:  5'- aGCGCuACCGUCucCUGCAGCgCCUGa-- -3'
miRNA:   3'- -CGCG-UGGCAGucGAUGUCG-GGAUagc -5'
14503 3' -55.2 NC_003521.1 + 44360 0.7 0.849042
Target:  5'- aCGCGCUGg-GGCUGCGGCCCa---- -3'
miRNA:   3'- cGCGUGGCagUCGAUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 48438 0.7 0.856695
Target:  5'- -aGCACCGUCAGCUGCugaAGUCgcGUCc -3'
miRNA:   3'- cgCGUGGCAGUCGAUG---UCGGgaUAGc -5'
14503 3' -55.2 NC_003521.1 + 226688 0.7 0.864154
Target:  5'- gGCGCAaCGUCAcGUgcCAGCCCU-UCGg -3'
miRNA:   3'- -CGCGUgGCAGU-CGauGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 209926 0.7 0.864154
Target:  5'- uCGCcuGCCGcaguUCAGCU-CGGCCCUcUCGg -3'
miRNA:   3'- cGCG--UGGC----AGUCGAuGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 220950 0.7 0.870697
Target:  5'- aGCGCcgacgcgGCCGUCAgcagggagcGCUGCAGCUCcacGUCGc -3'
miRNA:   3'- -CGCG-------UGGCAGU---------CGAUGUCGGGa--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 74352 0.69 0.885317
Target:  5'- gGCGCuGCUGcgCGGCUACGGCCagugCGg -3'
miRNA:   3'- -CGCG-UGGCa-GUCGAUGUCGGgauaGC- -5'
14503 3' -55.2 NC_003521.1 + 44488 0.69 0.891951
Target:  5'- aCGCGCUGgaaaUCgAGCUGCAGCCgCcGUCGu -3'
miRNA:   3'- cGCGUGGC----AG-UCGAUGUCGG-GaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 75548 0.69 0.891951
Target:  5'- aGCgGCGCCGgcggCGGCUACGccagcGCCCUccuGUCc -3'
miRNA:   3'- -CG-CGUGGCa---GUCGAUGU-----CGGGA---UAGc -5'
14503 3' -55.2 NC_003521.1 + 166643 0.69 0.904564
Target:  5'- cGCGCGCCGggcgccgCGGCgcaGCGGCCag--CGg -3'
miRNA:   3'- -CGCGUGGCa------GUCGa--UGUCGGgauaGC- -5'
14503 3' -55.2 NC_003521.1 + 187455 0.69 0.904564
Target:  5'- gGUGCGCCGcgUCAGCgggACGGUgCUgcacAUCGg -3'
miRNA:   3'- -CGCGUGGC--AGUCGa--UGUCGgGA----UAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.