miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 141591 1.11 0.004317
Target:  5'- cGCGCACCGUCAGCUACAGCCCUAUCGu -3'
miRNA:   3'- -CGCGUGGCAGUCGAUGUCGGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 222745 0.85 0.180216
Target:  5'- cGCGCGCCGUCugGGCUACGGCCaCggcGUCGg -3'
miRNA:   3'- -CGCGUGGCAG--UCGAUGUCGG-Ga--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 11523 0.83 0.240598
Target:  5'- cGCGCACCGUCGacauGCgcCAGUCCUAUCGc -3'
miRNA:   3'- -CGCGUGGCAGU----CGauGUCGGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 55217 0.75 0.577076
Target:  5'- cGCGCuCCGUCGGCguuuaaUACAGCCCcgagCGg -3'
miRNA:   3'- -CGCGuGGCAGUCG------AUGUCGGGaua-GC- -5'
14503 3' -55.2 NC_003521.1 + 154663 0.74 0.636788
Target:  5'- uGCGCACCGUCuucgAGCaGCGcuCCCUGUCa -3'
miRNA:   3'- -CGCGUGGCAG----UCGaUGUc-GGGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 136147 0.74 0.64677
Target:  5'- gGCGCGCCGcCAccaccuGCUGgAGCCC-AUCGa -3'
miRNA:   3'- -CGCGUGGCaGU------CGAUgUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 110649 0.73 0.706152
Target:  5'- cGgGCGCCGgcaCGGUcACGGCCCgGUCGg -3'
miRNA:   3'- -CgCGUGGCa--GUCGaUGUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 208521 0.73 0.706152
Target:  5'- cGUGCGCCG-CAGCUGucUGGCCCauUCGg -3'
miRNA:   3'- -CGCGUGGCaGUCGAU--GUCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 139539 0.73 0.706152
Target:  5'- uGCGCACCGagcaCAGCUACGcGCUCUGg-- -3'
miRNA:   3'- -CGCGUGGCa---GUCGAUGU-CGGGAUagc -5'
14503 3' -55.2 NC_003521.1 + 138822 0.73 0.715888
Target:  5'- gGCGCGCCugauggcggCGGCUACGGCCUg--CGg -3'
miRNA:   3'- -CGCGUGGca-------GUCGAUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 63885 0.73 0.715888
Target:  5'- gGCGCGCCGggAGCUGCAGCa--GUUGg -3'
miRNA:   3'- -CGCGUGGCagUCGAUGUCGggaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 125125 0.73 0.724594
Target:  5'- gGC-CGCCGUCAGCUugGccaguuuGCCCagGUCGg -3'
miRNA:   3'- -CGcGUGGCAGUCGAugU-------CGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 143540 0.73 0.725557
Target:  5'- cGCGCGCCGcCGGCgacgagcaGCAGCCgCcAUCGc -3'
miRNA:   3'- -CGCGUGGCaGUCGa-------UGUCGG-GaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 123901 0.73 0.725557
Target:  5'- cGCGUGCUGUCGGCgcGCGGCgCUGUUc -3'
miRNA:   3'- -CGCGUGGCAGUCGa-UGUCGgGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 170685 0.73 0.734194
Target:  5'- cGCGCucGCCG-CAGCUcgaggcccugauaGCGGCCCU-UCGg -3'
miRNA:   3'- -CGCG--UGGCaGUCGA-------------UGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 210231 0.72 0.76338
Target:  5'- aUGCACCGUCAGCgcggACGGCaCUUGg-- -3'
miRNA:   3'- cGCGUGGCAGUCGa---UGUCG-GGAUagc -5'
14503 3' -55.2 NC_003521.1 + 122686 0.72 0.76338
Target:  5'- -aGCACCGaCAGCUGCggGGCCg-GUCGg -3'
miRNA:   3'- cgCGUGGCaGUCGAUG--UCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 124050 0.71 0.790614
Target:  5'- aGCGUGCCG-CGGCgGCGGCCCa---- -3'
miRNA:   3'- -CGCGUGGCaGUCGaUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 181329 0.71 0.790614
Target:  5'- aGgGCGCCGUCugguucuguAGCUGCAGCgugaUUGUCGc -3'
miRNA:   3'- -CgCGUGGCAG---------UCGAUGUCGg---GAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 74564 0.71 0.799431
Target:  5'- uGCGCGugcCCGUgAGC-ACGGCCCgcUCGc -3'
miRNA:   3'- -CGCGU---GGCAgUCGaUGUCGGGauAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.