miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 2324 0.66 0.97593
Target:  5'- uGCGCGCCGgccuccuggGGCUGCuGaCCCUGggccgCGu -3'
miRNA:   3'- -CGCGUGGCag-------UCGAUGuC-GGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 3980 0.67 0.961374
Target:  5'- gGgGCACCGUCAGCgcggaGGUCUggcgCGa -3'
miRNA:   3'- -CgCGUGGCAGUCGaug--UCGGGaua-GC- -5'
14503 3' -55.2 NC_003521.1 + 11523 0.83 0.240598
Target:  5'- cGCGCACCGUCGacauGCgcCAGUCCUAUCGc -3'
miRNA:   3'- -CGCGUGGCAGU----CGauGUCGGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 16288 0.66 0.97593
Target:  5'- uGgGCGCCGUgGGUgccuacCGGCCCgg-CGg -3'
miRNA:   3'- -CgCGUGGCAgUCGau----GUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 17421 0.68 0.916287
Target:  5'- cCGCGCCGg-GGCgccacACGGCCCgcGUCGg -3'
miRNA:   3'- cGCGUGGCagUCGa----UGUCGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 25784 0.66 0.973404
Target:  5'- gGgGCuCCacgCGGCUGCAGCCCaccAUCa -3'
miRNA:   3'- -CgCGuGGca-GUCGAUGUCGGGa--UAGc -5'
14503 3' -55.2 NC_003521.1 + 26378 0.66 0.97593
Target:  5'- aGCGcCGCCGUCAucaacuuCUGCAGCaCC-GUCa -3'
miRNA:   3'- -CGC-GUGGCAGUc------GAUGUCG-GGaUAGc -5'
14503 3' -55.2 NC_003521.1 + 27013 0.66 0.97593
Target:  5'- cCGCACCGUgaugUGGCUGC-GCCgUuUCGg -3'
miRNA:   3'- cGCGUGGCA----GUCGAUGuCGGgAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 39153 0.68 0.937013
Target:  5'- uGC-CACCGgcggcgCAGCUcGCGGCCCaguUCGu -3'
miRNA:   3'- -CGcGUGGCa-----GUCGA-UGUCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 40335 0.67 0.946016
Target:  5'- uGCGCGCCGcCAGUU-UGGCCaggAUCa -3'
miRNA:   3'- -CGCGUGGCaGUCGAuGUCGGga-UAGc -5'
14503 3' -55.2 NC_003521.1 + 40806 0.67 0.952967
Target:  5'- -gGCGCgGUCAGCUAUucgccucggggcggGGCCCg--CGc -3'
miRNA:   3'- cgCGUGgCAGUCGAUG--------------UCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 44171 0.66 0.973404
Target:  5'- uGCGCACC--CAGCUggACGuGCUCUAcUCGg -3'
miRNA:   3'- -CGCGUGGcaGUCGA--UGU-CGGGAU-AGC- -5'
14503 3' -55.2 NC_003521.1 + 44360 0.7 0.849042
Target:  5'- aCGCGCUGg-GGCUGCGGCCCa---- -3'
miRNA:   3'- cGCGUGGCagUCGAUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 44488 0.69 0.891951
Target:  5'- aCGCGCUGgaaaUCgAGCUGCAGCCgCcGUCGu -3'
miRNA:   3'- cGCGUGGC----AG-UCGAUGUCGG-GaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 45542 0.71 0.828285
Target:  5'- gGCGCcCCGUCAGCggcgGCgaauggugagcguggAGCCCUucUCGc -3'
miRNA:   3'- -CGCGuGGCAGUCGa---UG---------------UCGGGAu-AGC- -5'
14503 3' -55.2 NC_003521.1 + 48438 0.7 0.856695
Target:  5'- -aGCACCGUCAGCUGCugaAGUCgcGUCc -3'
miRNA:   3'- cgCGUGGCAGUCGAUG---UCGGgaUAGc -5'
14503 3' -55.2 NC_003521.1 + 48610 0.66 0.963384
Target:  5'- cGUGCACCGUCAGCacgcacgcggauaGCAGCgCgagCa -3'
miRNA:   3'- -CGCGUGGCAGUCGa------------UGUCGgGauaGc -5'
14503 3' -55.2 NC_003521.1 + 55217 0.75 0.577076
Target:  5'- cGCGCuCCGUCGGCguuuaaUACAGCCCcgagCGg -3'
miRNA:   3'- -CGCGuGGCAGUCG------AUGUCGGGaua-GC- -5'
14503 3' -55.2 NC_003521.1 + 59978 0.67 0.950182
Target:  5'- cCGCGaCGUCAGCUAcCGGCUCU-UCa -3'
miRNA:   3'- cGCGUgGCAGUCGAU-GUCGGGAuAGc -5'
14503 3' -55.2 NC_003521.1 + 63885 0.73 0.715888
Target:  5'- gGCGCGCCGggAGCUGCAGCa--GUUGg -3'
miRNA:   3'- -CGCGUGGCagUCGAUGUCGggaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.