miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 239381 0.68 0.937013
Target:  5'- uGC-CACCGgcggcgCAGCUcGCGGCCCaguUCGu -3'
miRNA:   3'- -CGcGUGGCa-----GUCGA-UGUCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 227611 0.67 0.946016
Target:  5'- uGgGCGCCgGUCGGCccuccaacacgGCGGCCCgagCGg -3'
miRNA:   3'- -CgCGUGG-CAGUCGa----------UGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 226688 0.7 0.864154
Target:  5'- gGCGCAaCGUCAcGUgcCAGCCCU-UCGg -3'
miRNA:   3'- -CGCGUgGCAGU-CGauGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 223421 0.66 0.964682
Target:  5'- gGCGCGgCGUCaaAGCUuaauauagggaGCGGuCCCUcUCGa -3'
miRNA:   3'- -CGCGUgGCAG--UCGA-----------UGUC-GGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 222745 0.85 0.180216
Target:  5'- cGCGCGCCGUCugGGCUACGGCCaCggcGUCGg -3'
miRNA:   3'- -CGCGUGGCAG--UCGAUGUCGG-Ga--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 222106 0.66 0.973404
Target:  5'- cGC-CGCCGcCAGCgGCAGCCacagccggAUCGc -3'
miRNA:   3'- -CGcGUGGCaGUCGaUGUCGGga------UAGC- -5'
14503 3' -55.2 NC_003521.1 + 221810 0.66 0.97593
Target:  5'- uGgGCuCCGUCGGCgggGCGGgCgUGUCu -3'
miRNA:   3'- -CgCGuGGCAGUCGa--UGUCgGgAUAGc -5'
14503 3' -55.2 NC_003521.1 + 220950 0.7 0.870697
Target:  5'- aGCGCcgacgcgGCCGUCAgcagggagcGCUGCAGCUCcacGUCGc -3'
miRNA:   3'- -CGCG-------UGGCAGU---------CGAUGUCGGGa--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 213729 0.68 0.937013
Target:  5'- uGCGCGCCGUCgagAGCcUGCAcuGCCUg--CGc -3'
miRNA:   3'- -CGCGUGGCAG---UCG-AUGU--CGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 212015 0.68 0.937013
Target:  5'- aCGCcagguacugGCCGUCGGUgACGGgCUUGUCGg -3'
miRNA:   3'- cGCG---------UGGCAGUCGaUGUCgGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 210231 0.72 0.76338
Target:  5'- aUGCACCGUCAGCgcggACGGCaCUUGg-- -3'
miRNA:   3'- cGCGUGGCAGUCGa---UGUCG-GGAUagc -5'
14503 3' -55.2 NC_003521.1 + 209926 0.7 0.864154
Target:  5'- uCGCcuGCCGcaguUCAGCU-CGGCCCUcUCGg -3'
miRNA:   3'- cGCG--UGGC----AGUCGAuGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 209201 0.66 0.97593
Target:  5'- --cCACCGUCGGCcGCgguGGCCCUGcCa -3'
miRNA:   3'- cgcGUGGCAGUCGaUG---UCGGGAUaGc -5'
14503 3' -55.2 NC_003521.1 + 208694 0.67 0.957858
Target:  5'- gGUGCACCG-CGcccGCUACcuGCCCgagAUCa -3'
miRNA:   3'- -CGCGUGGCaGU---CGAUGu-CGGGa--UAGc -5'
14503 3' -55.2 NC_003521.1 + 208521 0.73 0.706152
Target:  5'- cGUGCGCCG-CAGCUGucUGGCCCauUCGg -3'
miRNA:   3'- -CGCGUGGCaGUCGAU--GUCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 204830 0.66 0.973404
Target:  5'- cCGuCGCCGUC-GCUGaccaAGCCCgguUCGu -3'
miRNA:   3'- cGC-GUGGCAGuCGAUg---UCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 203558 0.68 0.918523
Target:  5'- cGUGCACCGUCAGCgagaagagguuaGGCUCguUCGc -3'
miRNA:   3'- -CGCGUGGCAGUCGaug---------UCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 202621 0.67 0.957858
Target:  5'- gGCGcCAUCGUCcGCUACAucGUcgCCUGUCa -3'
miRNA:   3'- -CGC-GUGGCAGuCGAUGU--CG--GGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 202552 0.66 0.97593
Target:  5'- uGCGCGCCGgccuccuggGGCUGCuGaCCCUGggccgCGu -3'
miRNA:   3'- -CGCGUGGCag-------UCGAUGuC-GGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 198220 0.68 0.932172
Target:  5'- cCGUACCGUCAcGCUGucGCgCUAUCa -3'
miRNA:   3'- cGCGUGGCAGU-CGAUguCGgGAUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.