miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 226688 0.7 0.864154
Target:  5'- gGCGCAaCGUCAcGUgcCAGCCCU-UCGg -3'
miRNA:   3'- -CGCGUgGCAGU-CGauGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 148858 0.71 0.816625
Target:  5'- cGUGCACCGcgcCAGCUACgccAGCCUggccUCGg -3'
miRNA:   3'- -CGCGUGGCa--GUCGAUG---UCGGGau--AGC- -5'
14503 3' -55.2 NC_003521.1 + 135359 0.71 0.816625
Target:  5'- cGCGCGCCGUCuccgcggcGGUUAUcGCCCg--CGg -3'
miRNA:   3'- -CGCGUGGCAG--------UCGAUGuCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 114836 0.71 0.824987
Target:  5'- cGCGCACCGugcUCAuGCUGC-GCCUUAgCGu -3'
miRNA:   3'- -CGCGUGGC---AGU-CGAUGuCGGGAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 45542 0.71 0.828285
Target:  5'- gGCGCcCCGUCAGCggcgGCgaauggugagcguggAGCCCUucUCGc -3'
miRNA:   3'- -CGCGuGGCAGUCGa---UG---------------UCGGGAu-AGC- -5'
14503 3' -55.2 NC_003521.1 + 153415 0.71 0.833181
Target:  5'- gGUGCGCCaccggcgugGUCAGCaGCAGCCg-GUCGc -3'
miRNA:   3'- -CGCGUGG---------CAGUCGaUGUCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 152794 0.7 0.848266
Target:  5'- uGCGCACCGccUCGGUcaccggcagguggUACAGCUCggcGUCGc -3'
miRNA:   3'- -CGCGUGGC--AGUCG-------------AUGUCGGGa--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 156367 0.7 0.849042
Target:  5'- aGCGCuACCGUCucCUGCAGCgCCUGa-- -3'
miRNA:   3'- -CGCG-UGGCAGucGAUGUCG-GGAUagc -5'
14503 3' -55.2 NC_003521.1 + 44360 0.7 0.849042
Target:  5'- aCGCGCUGg-GGCUGCGGCCCa---- -3'
miRNA:   3'- cGCGUGGCagUCGAUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 181329 0.71 0.790614
Target:  5'- aGgGCGCCGUCugguucuguAGCUGCAGCgugaUUGUCGc -3'
miRNA:   3'- -CgCGUGGCAG---------UCGAUGUCGg---GAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 122686 0.72 0.76338
Target:  5'- -aGCACCGaCAGCUGCggGGCCg-GUCGg -3'
miRNA:   3'- cgCGUGGCaGUCGAUG--UCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 143540 0.73 0.725557
Target:  5'- cGCGCGCCGcCGGCgacgagcaGCAGCCgCcAUCGc -3'
miRNA:   3'- -CGCGUGGCaGUCGa-------UGUCGG-GaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 222745 0.85 0.180216
Target:  5'- cGCGCGCCGUCugGGCUACGGCCaCggcGUCGg -3'
miRNA:   3'- -CGCGUGGCAG--UCGAUGUCGG-Ga--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 55217 0.75 0.577076
Target:  5'- cGCGCuCCGUCGGCguuuaaUACAGCCCcgagCGg -3'
miRNA:   3'- -CGCGuGGCAGUCG------AUGUCGGGaua-GC- -5'
14503 3' -55.2 NC_003521.1 + 136147 0.74 0.64677
Target:  5'- gGCGCGCCGcCAccaccuGCUGgAGCCC-AUCGa -3'
miRNA:   3'- -CGCGUGGCaGU------CGAUgUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 110649 0.73 0.706152
Target:  5'- cGgGCGCCGgcaCGGUcACGGCCCgGUCGg -3'
miRNA:   3'- -CgCGUGGCa--GUCGaUGUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 138822 0.73 0.715888
Target:  5'- gGCGCGCCugauggcggCGGCUACGGCCUg--CGg -3'
miRNA:   3'- -CGCGUGGca-------GUCGAUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 63885 0.73 0.715888
Target:  5'- gGCGCGCCGggAGCUGCAGCa--GUUGg -3'
miRNA:   3'- -CGCGUGGCagUCGAUGUCGggaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 125125 0.73 0.724594
Target:  5'- gGC-CGCCGUCAGCUugGccaguuuGCCCagGUCGg -3'
miRNA:   3'- -CGcGUGGCAGUCGAugU-------CGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 123901 0.73 0.725557
Target:  5'- cGCGUGCUGUCGGCgcGCGGCgCUGUUc -3'
miRNA:   3'- -CGCGUGGCAGUCGa-UGUCGgGAUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.