miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 202552 0.66 0.97593
Target:  5'- uGCGCGCCGgccuccuggGGCUGCuGaCCCUGggccgCGu -3'
miRNA:   3'- -CGCGUGGCag-------UCGAUGuC-GGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 104109 0.66 0.964682
Target:  5'- gGCGCGCUGcCAGUccucgGCGGCguCCUGcUCGg -3'
miRNA:   3'- -CGCGUGGCaGUCGa----UGUCG--GGAU-AGC- -5'
14503 3' -55.2 NC_003521.1 + 191993 0.66 0.97593
Target:  5'- cCGCG-CGUCAGCgucgaGCAGCCgUucAUCGu -3'
miRNA:   3'- cGCGUgGCAGUCGa----UGUCGGgA--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 100658 0.66 0.973404
Target:  5'- cGCGUugCGUCGGCUGCGGaug-GUg- -3'
miRNA:   3'- -CGCGugGCAGUCGAUGUCgggaUAgc -5'
14503 3' -55.2 NC_003521.1 + 84895 0.66 0.964682
Target:  5'- gGCGCgaguagGCCGUCAGCgccCGGUCCa---- -3'
miRNA:   3'- -CGCG------UGGCAGUCGau-GUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 70909 0.66 0.967484
Target:  5'- aGCGCcgucagaGCCGUCAGCgcCAGCaggGUCc -3'
miRNA:   3'- -CGCG-------UGGCAGUCGauGUCGggaUAGc -5'
14503 3' -55.2 NC_003521.1 + 209201 0.66 0.97593
Target:  5'- --cCACCGUCGGCcGCgguGGCCCUGcCa -3'
miRNA:   3'- cgcGUGGCAGUCGaUG---UCGGGAUaGc -5'
14503 3' -55.2 NC_003521.1 + 221810 0.66 0.97593
Target:  5'- uGgGCuCCGUCGGCgggGCGGgCgUGUCu -3'
miRNA:   3'- -CgCGuGGCAGUCGa--UGUCgGgAUAGc -5'
14503 3' -55.2 NC_003521.1 + 85313 0.66 0.970691
Target:  5'- aCGuCGCCGUC-GCUcCAGCCUUGgcccgCGg -3'
miRNA:   3'- cGC-GUGGCAGuCGAuGUCGGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 103226 0.66 0.97593
Target:  5'- aGCGCGCgGUaCAGgU-CGGCCUcguUGUCGu -3'
miRNA:   3'- -CGCGUGgCA-GUCgAuGUCGGG---AUAGC- -5'
14503 3' -55.2 NC_003521.1 + 25784 0.66 0.973404
Target:  5'- gGgGCuCCacgCGGCUGCAGCCCaccAUCa -3'
miRNA:   3'- -CgCGuGGca-GUCGAUGUCGGGa--UAGc -5'
14503 3' -55.2 NC_003521.1 + 194562 0.66 0.970691
Target:  5'- gGCGCcUCGUCgaaauAGCUugGGCCgCUgcccAUCGg -3'
miRNA:   3'- -CGCGuGGCAG-----UCGAugUCGG-GA----UAGC- -5'
14503 3' -55.2 NC_003521.1 + 127896 0.66 0.973141
Target:  5'- aGCgGCACCGUCucGCUGuuGUCCUggcagugcgugaaGUCGa -3'
miRNA:   3'- -CG-CGUGGCAGu-CGAUguCGGGA-------------UAGC- -5'
14503 3' -55.2 NC_003521.1 + 187638 0.66 0.964037
Target:  5'- cGCGCGCCGcuggccaucuucaUCGGCgaggGCGGCCgcguguaCUGUUa -3'
miRNA:   3'- -CGCGUGGC-------------AGUCGa---UGUCGG-------GAUAGc -5'
14503 3' -55.2 NC_003521.1 + 48610 0.66 0.963384
Target:  5'- cGUGCACCGUCAGCacgcacgcggauaGCAGCgCgagCa -3'
miRNA:   3'- -CGCGUGGCAGUCGa------------UGUCGgGauaGc -5'
14503 3' -55.2 NC_003521.1 + 143839 0.66 0.964682
Target:  5'- uGCGCGCCGcccUCuGCgacUACAGCCUcagCGa -3'
miRNA:   3'- -CGCGUGGC---AGuCG---AUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 191009 0.66 0.970691
Target:  5'- gGCGCACUGcaCGGCgccCAGCCau-UCGg -3'
miRNA:   3'- -CGCGUGGCa-GUCGau-GUCGGgauAGC- -5'
14503 3' -55.2 NC_003521.1 + 150977 0.66 0.973404
Target:  5'- gGCGCuggcgGCCGacaUCGGCUACGGCgUCUA-CGu -3'
miRNA:   3'- -CGCG-----UGGC---AGUCGAUGUCG-GGAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 114953 0.66 0.964682
Target:  5'- cGCGCAgCGgcggCuGCUGCGGCgucagucgCCUGUUGc -3'
miRNA:   3'- -CGCGUgGCa---GuCGAUGUCG--------GGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 223421 0.66 0.964682
Target:  5'- gGCGCGgCGUCaaAGCUuaauauagggaGCGGuCCCUcUCGa -3'
miRNA:   3'- -CGCGUgGCAG--UCGA-----------UGUC-GGGAuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.