miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 68361 0.67 0.957858
Target:  5'- gGCGCACCG-CuGC--CGGCCCUGc-- -3'
miRNA:   3'- -CGCGUGGCaGuCGauGUCGGGAUagc -5'
14503 3' -55.2 NC_003521.1 + 68803 0.68 0.916287
Target:  5'- uGCGCGCCGUCcggauAGacuUGCGGgCCCUggcacaGUCGg -3'
miRNA:   3'- -CGCGUGGCAG-----UCg--AUGUC-GGGA------UAGC- -5'
14503 3' -55.2 NC_003521.1 + 70909 0.66 0.967484
Target:  5'- aGCGCcgucagaGCCGUCAGCgcCAGCaggGUCc -3'
miRNA:   3'- -CGCG-------UGGCAGUCGauGUCGggaUAGc -5'
14503 3' -55.2 NC_003521.1 + 71165 0.66 0.970691
Target:  5'- aCGCACUGUCuGUUgaacgGCAGCCuCUA-CGa -3'
miRNA:   3'- cGCGUGGCAGuCGA-----UGUCGG-GAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 72170 0.67 0.946016
Target:  5'- -gGCGCCGUCGGCau--GCCC--UCGa -3'
miRNA:   3'- cgCGUGGCAGUCGauguCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 74352 0.69 0.885317
Target:  5'- gGCGCuGCUGcgCGGCUACGGCCagugCGg -3'
miRNA:   3'- -CGCG-UGGCa-GUCGAUGUCGGgauaGC- -5'
14503 3' -55.2 NC_003521.1 + 74456 0.71 0.833181
Target:  5'- uGCGCACCGuguUCAGCgaGCAcGUCCUGggcuUCGa -3'
miRNA:   3'- -CGCGUGGC---AGUCGa-UGU-CGGGAU----AGC- -5'
14503 3' -55.2 NC_003521.1 + 74564 0.71 0.799431
Target:  5'- uGCGCGugcCCGUgAGC-ACGGCCCgcUCGc -3'
miRNA:   3'- -CGCGU---GGCAgUCGaUGUCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 75548 0.69 0.891951
Target:  5'- aGCgGCGCCGgcggCGGCUACGccagcGCCCUccuGUCc -3'
miRNA:   3'- -CG-CGUGGCa---GUCGAUGU-----CGGGA---UAGc -5'
14503 3' -55.2 NC_003521.1 + 76115 0.66 0.975191
Target:  5'- cCGCACCGcgucgucuucuucgUCAGCcgcCGGCCUcGUCGu -3'
miRNA:   3'- cGCGUGGC--------------AGUCGau-GUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 76935 0.71 0.833181
Target:  5'- aCGCACCGUCGGC-ACcuGCCUccGUCGc -3'
miRNA:   3'- cGCGUGGCAGUCGaUGu-CGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 84549 0.68 0.937013
Target:  5'- cUGCAgCCGcuuguUCAGCgaGCGGCCCUGguUCGg -3'
miRNA:   3'- cGCGU-GGC-----AGUCGa-UGUCGGGAU--AGC- -5'
14503 3' -55.2 NC_003521.1 + 84895 0.66 0.964682
Target:  5'- gGCGCgaguagGCCGUCAGCgccCGGUCCa---- -3'
miRNA:   3'- -CGCG------UGGCAGUCGau-GUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 85313 0.66 0.970691
Target:  5'- aCGuCGCCGUC-GCUcCAGCCUUGgcccgCGg -3'
miRNA:   3'- cGC-GUGGCAGuCGAuGUCGGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 88486 0.66 0.967786
Target:  5'- -aGCAgCGUCGGCgcgGGCCCgaacgaGUCGa -3'
miRNA:   3'- cgCGUgGCAGUCGaugUCGGGa-----UAGC- -5'
14503 3' -55.2 NC_003521.1 + 90130 0.68 0.927105
Target:  5'- cGC-CGCCGgcgCAGCaGCAGCCCa---- -3'
miRNA:   3'- -CGcGUGGCa--GUCGaUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 91214 0.68 0.932172
Target:  5'- -aGCGCCGUUucgcgcaugagGGCgUGCAGCCC-GUUGa -3'
miRNA:   3'- cgCGUGGCAG-----------UCG-AUGUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 93739 0.67 0.950182
Target:  5'- cGCGUgaGCCGUCGGCcgaUACgaAGCCCggcUCu -3'
miRNA:   3'- -CGCG--UGGCAGUCG---AUG--UCGGGau-AGc -5'
14503 3' -55.2 NC_003521.1 + 94135 0.67 0.950182
Target:  5'- aGCGCACCGUgCucagggAGCUGCGGUCggcuUCGu -3'
miRNA:   3'- -CGCGUGGCA-G------UCGAUGUCGGgau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 98802 0.66 0.973404
Target:  5'- cGCGCGCCGUCcacgucgaGGCguUGCAGCUgcUUGgcgCGg -3'
miRNA:   3'- -CGCGUGGCAG--------UCG--AUGUCGG--GAUa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.