miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 100658 0.66 0.973404
Target:  5'- cGCGUugCGUCGGCUGCGGaug-GUg- -3'
miRNA:   3'- -CGCGugGCAGUCGAUGUCgggaUAgc -5'
14503 3' -55.2 NC_003521.1 + 102124 0.71 0.799431
Target:  5'- gGCGC-CCGUgccgcccaGGCUcACGGCCUUGUCGc -3'
miRNA:   3'- -CGCGuGGCAg-------UCGA-UGUCGGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 103226 0.66 0.97593
Target:  5'- aGCGCGCgGUaCAGgU-CGGCCUcguUGUCGu -3'
miRNA:   3'- -CGCGUGgCA-GUCgAuGUCGGG---AUAGC- -5'
14503 3' -55.2 NC_003521.1 + 104109 0.66 0.964682
Target:  5'- gGCGCGCUGcCAGUccucgGCGGCguCCUGcUCGg -3'
miRNA:   3'- -CGCGUGGCaGUCGa----UGUCG--GGAU-AGC- -5'
14503 3' -55.2 NC_003521.1 + 104196 0.68 0.926585
Target:  5'- cGCGC-CCGUgGccgauuacgugcuGCUGCAGCCCag-CGa -3'
miRNA:   3'- -CGCGuGGCAgU-------------CGAUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 108840 0.66 0.968972
Target:  5'- uGCGCAgCucCAGCUgcgugaacacgcgguGCAGCCCguaGUCGa -3'
miRNA:   3'- -CGCGUgGcaGUCGA---------------UGUCGGGa--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 110649 0.73 0.706152
Target:  5'- cGgGCGCCGgcaCGGUcACGGCCCgGUCGg -3'
miRNA:   3'- -CgCGUGGCa--GUCGaUGUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 111248 0.68 0.927105
Target:  5'- gGCGCGgCG-CGGCggaGCAGCCaucGUCGg -3'
miRNA:   3'- -CGCGUgGCaGUCGa--UGUCGGga-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 114836 0.71 0.824987
Target:  5'- cGCGCACCGugcUCAuGCUGC-GCCUUAgCGu -3'
miRNA:   3'- -CGCGUGGC---AGU-CGAUGuCGGGAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 114953 0.66 0.964682
Target:  5'- cGCGCAgCGgcggCuGCUGCGGCgucagucgCCUGUUGc -3'
miRNA:   3'- -CGCGUgGCa---GuCGAUGUCG--------GGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 116921 0.68 0.927105
Target:  5'- uCGCuCCGaCAGCUACGGCCUgcUgGg -3'
miRNA:   3'- cGCGuGGCaGUCGAUGUCGGGauAgC- -5'
14503 3' -55.2 NC_003521.1 + 122686 0.72 0.76338
Target:  5'- -aGCACCGaCAGCUGCggGGCCg-GUCGg -3'
miRNA:   3'- cgCGUGGCaGUCGAUG--UCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 123172 0.67 0.941627
Target:  5'- gGCGCACCGUCuc--GCGGCgCaGUCGc -3'
miRNA:   3'- -CGCGUGGCAGucgaUGUCGgGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 123458 0.67 0.941627
Target:  5'- cUGCACCGUCAgGCUGggcguCAGCuCCgUGUCc -3'
miRNA:   3'- cGCGUGGCAGU-CGAU-----GUCG-GG-AUAGc -5'
14503 3' -55.2 NC_003521.1 + 123901 0.73 0.725557
Target:  5'- cGCGUGCUGUCGGCgcGCGGCgCUGUUc -3'
miRNA:   3'- -CGCGUGGCAGUCGa-UGUCGgGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 123989 0.67 0.954128
Target:  5'- gGCG-GCCGUCAggucuggaaaccGCUGCAGCaCCcaGUCGg -3'
miRNA:   3'- -CGCgUGGCAGU------------CGAUGUCG-GGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 124050 0.71 0.790614
Target:  5'- aGCGUGCCG-CGGCgGCGGCCCa---- -3'
miRNA:   3'- -CGCGUGGCaGUCGaUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 125125 0.73 0.724594
Target:  5'- gGC-CGCCGUCAGCUugGccaguuuGCCCagGUCGg -3'
miRNA:   3'- -CGcGUGGCAGUCGAugU-------CGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 126720 0.67 0.950182
Target:  5'- uGgGCGCCGUCAccGCacaGCAGCCgUGUa- -3'
miRNA:   3'- -CgCGUGGCAGU--CGa--UGUCGGgAUAgc -5'
14503 3' -55.2 NC_003521.1 + 126849 0.69 0.910538
Target:  5'- cUGCACCGcCAGgaACAGCUCg--CGg -3'
miRNA:   3'- cGCGUGGCaGUCgaUGUCGGGauaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.