miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 212503 0.66 0.808831
Target:  5'- gGCGguCCGCaGGCCG-CGCCGGgGUcGCu -3'
miRNA:   3'- aCGC--GGCG-CCGGCaGUGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 223782 0.66 0.766267
Target:  5'- gGCGCCGUuaccgccgugGGCCGcCAgaCGACG-GGCc -3'
miRNA:   3'- aCGCGGCG----------CCGGCaGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 233393 0.66 0.787076
Target:  5'- gUGCGCCGCGuCCGUgauggaacacaggggCAUCGuuuGCGUGGg -3'
miRNA:   3'- -ACGCGGCGCcGGCA---------------GUGGC---UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 37007 0.66 0.775016
Target:  5'- gGCGUCGCGGCggaGUCaggACCGACa---- -3'
miRNA:   3'- aCGCGGCGCCGg--CAG---UGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 29900 0.66 0.778485
Target:  5'- gGCGacgacgaccgacgacCCGUGGCCGUCAagGGCcUGGCa -3'
miRNA:   3'- aCGC---------------GGCGCCGGCAGUggCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 88054 0.66 0.775016
Target:  5'- cGCGCggaugagguCGCGGUgGUCGgCGGCGcccgUGACc -3'
miRNA:   3'- aCGCG---------GCGCCGgCAGUgGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 196880 0.66 0.775016
Target:  5'- aGCaGCCGcCGGUgauCGUCGCCGAagaGgucggGACg -3'
miRNA:   3'- aCG-CGGC-GCCG---GCAGUGGCUg--Ca----CUG- -5'
14503 5' -61.6 NC_003521.1 + 105578 0.66 0.808831
Target:  5'- -cCGCCGcCGuGUCGUCGCCGcCGccGGCg -3'
miRNA:   3'- acGCGGC-GC-CGGCAGUGGCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 49689 0.66 0.792174
Target:  5'- gGCGCUGUcGCCGUCagccuGCCaGAUG-GACa -3'
miRNA:   3'- aCGCGGCGcCGGCAG-----UGG-CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 95789 0.66 0.765387
Target:  5'- cGUGCCGCucGGCCacgcgaccagcgcGUCGgCGAUGUcGGCg -3'
miRNA:   3'- aCGCGGCG--CCGG-------------CAGUgGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 21774 0.66 0.800568
Target:  5'- gGCGCCGUGG-CGU-GCCugucCGUGGCg -3'
miRNA:   3'- aCGCGGCGCCgGCAgUGGcu--GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 58402 0.66 0.800568
Target:  5'- -cUGCCGCGGCCG-CGugaugCGGCGguUGACg -3'
miRNA:   3'- acGCGGCGCCGGCaGUg----GCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 145263 0.66 0.782795
Target:  5'- gGCGCCuccucggccucgGCGGCCagcucgcgCGCCGGCGUcucgccgGGCa -3'
miRNA:   3'- aCGCGG------------CGCCGGca------GUGGCUGCA-------CUG- -5'
14503 5' -61.6 NC_003521.1 + 105935 0.66 0.808831
Target:  5'- cUGCG-UGUGGCCGgCGCgGAUGaUGACc -3'
miRNA:   3'- -ACGCgGCGCCGGCaGUGgCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 85742 0.66 0.783654
Target:  5'- aGCGCCGCgaacuuGGCCaUgAgCGAgGUGGCc -3'
miRNA:   3'- aCGCGGCG------CCGGcAgUgGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 129586 0.66 0.783654
Target:  5'- -cCGCCGC-GCCG-CGCCGGcCGcGACg -3'
miRNA:   3'- acGCGGCGcCGGCaGUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 123567 0.66 0.800568
Target:  5'- aGCGCCagGCaGUCGUgcagCGCCG-CGUGAUg -3'
miRNA:   3'- aCGCGG--CGcCGGCA----GUGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 150876 0.66 0.800568
Target:  5'- gGCGagaacgaggUGCGGCCGcaCGCCGGCGUcaucGACu -3'
miRNA:   3'- aCGCg--------GCGCCGGCa-GUGGCUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 76961 0.66 0.792174
Target:  5'- aGCauGUCGCGGCCGaugCGCgUGAUGcUGGCg -3'
miRNA:   3'- aCG--CGGCGCCGGCa--GUG-GCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 100705 0.66 0.766267
Target:  5'- gGCGCCGCcGCgGcCGCUGAUGgaggaGGCg -3'
miRNA:   3'- aCGCGGCGcCGgCaGUGGCUGCa----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.