Results 21 - 40 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 105935 | 0.66 | 0.808831 |
Target: 5'- cUGCG-UGUGGCCGgCGCgGAUGaUGACc -3' miRNA: 3'- -ACGCgGCGCCGGCaGUGgCUGC-ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 129586 | 0.66 | 0.783654 |
Target: 5'- -cCGCCGC-GCCG-CGCCGGcCGcGACg -3' miRNA: 3'- acGCGGCGcCGGCaGUGGCU-GCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 224724 | 0.66 | 0.800568 |
Target: 5'- cGC-CCGUGGUgcUCGCCGACGcaGGCg -3' miRNA: 3'- aCGcGGCGCCGgcAGUGGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 111191 | 0.66 | 0.781074 |
Target: 5'- gGCGCCGCGGaCgGUgggcugggcgauggCGCCGGaaaGUGGg -3' miRNA: 3'- aCGCGGCGCC-GgCA--------------GUGGCUg--CACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 73835 | 0.66 | 0.808831 |
Target: 5'- cGCGCUGaCGGCCGagGgaaCGACGUcaaccacagcGACg -3' miRNA: 3'- aCGCGGC-GCCGGCagUg--GCUGCA----------CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 188063 | 0.66 | 0.783654 |
Target: 5'- -aUGCCGCGGUagagccgcuCGUCucccgaucccCUGGCGUGACg -3' miRNA: 3'- acGCGGCGCCG---------GCAGu---------GGCUGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 135361 | 0.66 | 0.783654 |
Target: 5'- cGCGCCgucuccGCGGCgGUUAUCGcccGCG-GGCg -3' miRNA: 3'- aCGCGG------CGCCGgCAGUGGC---UGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 99005 | 0.66 | 0.783654 |
Target: 5'- gGUaCCGCGGUCGUCuuguaGACGaUGGCg -3' miRNA: 3'- aCGcGGCGCCGGCAGugg--CUGC-ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 129986 | 0.66 | 0.792174 |
Target: 5'- -cCGUCGCuGCCGcugCGCCGGCGgcGGCg -3' miRNA: 3'- acGCGGCGcCGGCa--GUGGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 88054 | 0.66 | 0.775016 |
Target: 5'- cGCGCggaugagguCGCGGUgGUCGgCGGCGcccgUGACc -3' miRNA: 3'- aCGCG---------GCGCCGgCAGUgGCUGC----ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 114953 | 0.66 | 0.800568 |
Target: 5'- cGCGCagcgGCGGCUG-CugCGGCGUc-- -3' miRNA: 3'- aCGCGg---CGCCGGCaGugGCUGCAcug -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 18717 | 0.66 | 0.783654 |
Target: 5'- --gGCUGUGGCUGcCGCUGGCGgcGGCg -3' miRNA: 3'- acgCGGCGCCGGCaGUGGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 183793 | 0.66 | 0.775016 |
Target: 5'- aGUGCCuggGCGGCgUGuUCAUCcGCGUGGCg -3' miRNA: 3'- aCGCGG---CGCCG-GC-AGUGGcUGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 102794 | 0.66 | 0.766267 |
Target: 5'- cGCGCCgGCGGCCGcCAgcuCgGGCGgcaGCa -3' miRNA: 3'- aCGCGG-CGCCGGCaGU---GgCUGCac-UG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 145263 | 0.66 | 0.782795 |
Target: 5'- gGCGCCuccucggccucgGCGGCCagcucgcgCGCCGGCGUcucgccgGGCa -3' miRNA: 3'- aCGCGG------------CGCCGGca------GUGGCUGCA-------CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 111553 | 0.66 | 0.774146 |
Target: 5'- gGCGCCucuaccucgagguGCGGCUGa-GCCGGCGgguuccgGACu -3' miRNA: 3'- aCGCGG-------------CGCCGGCagUGGCUGCa------CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 105578 | 0.66 | 0.808831 |
Target: 5'- -cCGCCGcCGuGUCGUCGCCGcCGccGGCg -3' miRNA: 3'- acGCGGC-GC-CGGCAGUGGCuGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 85742 | 0.66 | 0.783654 |
Target: 5'- aGCGCCGCgaacuuGGCCaUgAgCGAgGUGGCc -3' miRNA: 3'- aCGCGGCG------CCGGcAgUgGCUgCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 100705 | 0.66 | 0.766267 |
Target: 5'- gGCGCCGCcGCgGcCGCUGAUGgaggaGGCg -3' miRNA: 3'- aCGCGGCGcCGgCaGUGGCUGCa----CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 58402 | 0.66 | 0.800568 |
Target: 5'- -cUGCCGCGGCCG-CGugaugCGGCGguUGACg -3' miRNA: 3'- acGCGGCGCCGGCaGUg----GCUGC--ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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