miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 124141 0.66 0.775016
Target:  5'- cGCGCCGCugccuccGCCGcCGCUGcCGUG-Ca -3'
miRNA:   3'- aCGCGGCGc------CGGCaGUGGCuGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 188063 0.66 0.783654
Target:  5'- -aUGCCGCGGUagagccgcuCGUCucccgaucccCUGGCGUGACg -3'
miRNA:   3'- acGCGGCGCCG---------GCAGu---------GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 30239 0.66 0.792174
Target:  5'- cGCGCUGCaGGuCCG-CGCgGuugcCGUGGCg -3'
miRNA:   3'- aCGCGGCG-CC-GGCaGUGgCu---GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 135361 0.66 0.783654
Target:  5'- cGCGCCgucuccGCGGCgGUUAUCGcccGCG-GGCg -3'
miRNA:   3'- aCGCGG------CGCCGgCAGUGGC---UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 74108 0.66 0.78963
Target:  5'- cGCGaCUGCGcgacgcccaugggcGCCGUgCAggaCGACGUGGCg -3'
miRNA:   3'- aCGC-GGCGC--------------CGGCA-GUg--GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 223782 0.66 0.766267
Target:  5'- gGCGCCGUuaccgccgugGGCCGcCAgaCGACG-GGCc -3'
miRNA:   3'- aCGCGGCG----------CCGGCaGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 100705 0.66 0.766267
Target:  5'- gGCGCCGCcGCgGcCGCUGAUGgaggaGGCg -3'
miRNA:   3'- aCGCGGCGcCGgCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 18717 0.66 0.783654
Target:  5'- --gGCUGUGGCUGcCGCUGGCGgcGGCg -3'
miRNA:   3'- acgCGGCGCCGGCaGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 111553 0.66 0.774146
Target:  5'- gGCGCCucuaccucgagguGCGGCUGa-GCCGGCGgguuccgGACu -3'
miRNA:   3'- aCGCGG-------------CGCCGGCagUGGCUGCa------CUG- -5'
14503 5' -61.6 NC_003521.1 + 111191 0.66 0.781074
Target:  5'- gGCGCCGCGGaCgGUgggcugggcgauggCGCCGGaaaGUGGg -3'
miRNA:   3'- aCGCGGCGCC-GgCA--------------GUGGCUg--CACUg -5'
14503 5' -61.6 NC_003521.1 + 88054 0.66 0.775016
Target:  5'- cGCGCggaugagguCGCGGUgGUCGgCGGCGcccgUGACc -3'
miRNA:   3'- aCGCG---------GCGCCGgCAGUgGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 99005 0.66 0.783654
Target:  5'- gGUaCCGCGGUCGUCuuguaGACGaUGGCg -3'
miRNA:   3'- aCGcGGCGCCGGCAGugg--CUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 85742 0.66 0.783654
Target:  5'- aGCGCCGCgaacuuGGCCaUgAgCGAgGUGGCc -3'
miRNA:   3'- aCGCGGCG------CCGGcAgUgGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 129586 0.66 0.783654
Target:  5'- -cCGCCGC-GCCG-CGCCGGcCGcGACg -3'
miRNA:   3'- acGCGGCGcCGGCaGUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 131080 0.66 0.766267
Target:  5'- gGCGaCCGCGGCuCG-CGCgGGCuccgGACg -3'
miRNA:   3'- aCGC-GGCGCCG-GCaGUGgCUGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 145263 0.66 0.782795
Target:  5'- gGCGCCuccucggccucgGCGGCCagcucgcgCGCCGGCGUcucgccgGGCa -3'
miRNA:   3'- aCGCGG------------CGCCGGca------GUGGCUGCA-------CUG- -5'
14503 5' -61.6 NC_003521.1 + 129986 0.66 0.792174
Target:  5'- -cCGUCGCuGCCGcugCGCCGGCGgcGGCg -3'
miRNA:   3'- acGCGGCGcCGGCa--GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 76961 0.66 0.792174
Target:  5'- aGCauGUCGCGGCCGaugCGCgUGAUGcUGGCg -3'
miRNA:   3'- aCG--CGGCGCCGGCa--GUG-GCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 61891 0.66 0.792174
Target:  5'- aGCGagcagaUGCcGCCGUUccCCGACGUGAUg -3'
miRNA:   3'- aCGCg-----GCGcCGGCAGu-GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 102794 0.66 0.766267
Target:  5'- cGCGCCgGCGGCCGcCAgcuCgGGCGgcaGCa -3'
miRNA:   3'- aCGCGG-CGCCGGCaGU---GgCUGCac-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.