Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 27751 | 0.73 | 0.402926 |
Target: 5'- aGCGCCGCGauGUCGUC-CCGACGgcGCa -3' miRNA: 3'- aCGCGGCGC--CGGCAGuGGCUGCacUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 188662 | 0.75 | 0.32835 |
Target: 5'- gGCGgacCCGCGGuaCCGUCGCUGACG-GGCg -3' miRNA: 3'- aCGC---GGCGCC--GGCAGUGGCUGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 77592 | 0.74 | 0.334626 |
Target: 5'- -cCGCCGUGGCCGaacccacgUCACCGGgcgcgccCGUGACg -3' miRNA: 3'- acGCGGCGCCGGC--------AGUGGCU-------GCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 133945 | 0.74 | 0.335329 |
Target: 5'- cUGCGCCGCuacuaCCGUCACCGuACG-GGCg -3' miRNA: 3'- -ACGCGGCGcc---GGCAGUGGC-UGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 38062 | 0.74 | 0.359863 |
Target: 5'- cGCGCCuguacagggguugugGUGGCCGUCGCUGGCaaGACc -3' miRNA: 3'- aCGCGG---------------CGCCGGCAGUGGCUGcaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 115101 | 0.74 | 0.36432 |
Target: 5'- cUGCGCCGUcGCCGcCcCCGuCGUGACc -3' miRNA: 3'- -ACGCGGCGcCGGCaGuGGCuGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 224324 | 0.73 | 0.379452 |
Target: 5'- aGCGCCGCaGCCcgugcucguagcGUCGCCGcACGUaGACc -3' miRNA: 3'- aCGCGGCGcCGG------------CAGUGGC-UGCA-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 69182 | 0.73 | 0.387175 |
Target: 5'- -cCGCCGCGGCCG-CGcuagacauacCCGACGUcGGCg -3' miRNA: 3'- acGCGGCGCCGGCaGU----------GGCUGCA-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 154654 | 0.73 | 0.395 |
Target: 5'- cGUGCCGCuGGCCGagGCCGGCagcgaGACg -3' miRNA: 3'- aCGCGGCG-CCGGCagUGGCUGca---CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 172786 | 0.75 | 0.321479 |
Target: 5'- gGCGCCGCGGaCCa-CGCCGccCGUGGCg -3' miRNA: 3'- aCGCGGCGCC-GGcaGUGGCu-GCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 164451 | 0.75 | 0.301513 |
Target: 5'- cGCgGCCGCGGCCGUCACgGuCGccGCu -3' miRNA: 3'- aCG-CGGCGCCGGCAGUGgCuGCacUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 136244 | 0.75 | 0.301513 |
Target: 5'- aUGaCGCaCGcCGGCCGcuaCGCCGACGUGAUu -3' miRNA: 3'- -AC-GCG-GC-GCCGGCa--GUGGCUGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 70758 | 0.81 | 0.122478 |
Target: 5'- cGCGCCGCGGCCGaUCACCagcugcACGUGGa -3' miRNA: 3'- aCGCGGCGCCGGC-AGUGGc-----UGCACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 75617 | 0.81 | 0.131696 |
Target: 5'- gGCGCCaCGGCUcaGUCGCCGACGaUGACg -3' miRNA: 3'- aCGCGGcGCCGG--CAGUGGCUGC-ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 123351 | 0.81 | 0.136212 |
Target: 5'- aGCGCCGCGGCCGUggccuccgacagccgCACCGACa-GGCg -3' miRNA: 3'- aCGCGGCGCCGGCA---------------GUGGCUGcaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 118216 | 0.78 | 0.201568 |
Target: 5'- cGCgGCCGCcGCCGUCGCCGGgGUGGu -3' miRNA: 3'- aCG-CGGCGcCGGCAGUGGCUgCACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 127272 | 0.77 | 0.226041 |
Target: 5'- gGCGCCcaggcGCGGCaCGUCcgacacGCCGugGUGGCg -3' miRNA: 3'- aCGCGG-----CGCCG-GCAG------UGGCugCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 127029 | 0.76 | 0.26099 |
Target: 5'- cGcCGCCGCggugcccgucgcgcuGGCCGUCGCCGuCGUcGACg -3' miRNA: 3'- aC-GCGGCG---------------CCGGCAGUGGCuGCA-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 73184 | 0.75 | 0.288742 |
Target: 5'- cGCGgaGCuGGCCGgCAUCGACGUGACc -3' miRNA: 3'- aCGCggCG-CCGGCaGUGGCUGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 149404 | 0.75 | 0.295074 |
Target: 5'- cGUgGCCGUGGCCGUCACgGACGa--- -3' miRNA: 3'- aCG-CGGCGCCGGCAGUGgCUGCacug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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