miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 141628 1.08 0.002015
Target:  5'- cUGCGCCGCGGCCGUCACCGACGUGACc -3'
miRNA:   3'- -ACGCGGCGCCGGCAGUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 70758 0.81 0.122478
Target:  5'- cGCGCCGCGGCCGaUCACCagcugcACGUGGa -3'
miRNA:   3'- aCGCGGCGCCGGC-AGUGGc-----UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 75617 0.81 0.131696
Target:  5'- gGCGCCaCGGCUcaGUCGCCGACGaUGACg -3'
miRNA:   3'- aCGCGGcGCCGG--CAGUGGCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 123351 0.81 0.136212
Target:  5'- aGCGCCGCGGCCGUggccuccgacagccgCACCGACa-GGCg -3'
miRNA:   3'- aCGCGGCGCCGGCA---------------GUGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 223313 0.8 0.163301
Target:  5'- cGCGCCGCcgGGCCGggaACCGcCGUGACc -3'
miRNA:   3'- aCGCGGCG--CCGGCag-UGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 118216 0.78 0.201568
Target:  5'- cGCgGCCGCcGCCGUCGCCGGgGUGGu -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGGCUgCACUg -5'
14503 5' -61.6 NC_003521.1 + 127272 0.77 0.226041
Target:  5'- gGCGCCcaggcGCGGCaCGUCcgacacGCCGugGUGGCg -3'
miRNA:   3'- aCGCGG-----CGCCG-GCAG------UGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 22185 0.77 0.226041
Target:  5'- gGCGCCGcCGGCCGUgGCCGcuuaccgccgcGCGcUGGCg -3'
miRNA:   3'- aCGCGGC-GCCGGCAgUGGC-----------UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 169550 0.77 0.247393
Target:  5'- cGUGCCGCGGCCcccgccucCGCCGAUGUuGGCg -3'
miRNA:   3'- aCGCGGCGCCGGca------GUGGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 171653 0.76 0.252986
Target:  5'- cGCGCCGCGGCgggcgucgggagCGUCGgCGGCaUGACg -3'
miRNA:   3'- aCGCGGCGCCG------------GCAGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 127029 0.76 0.26099
Target:  5'- cGcCGCCGCggugcccgucgcgcuGGCCGUCGCCGuCGUcGACg -3'
miRNA:   3'- aC-GCGGCG---------------CCGGCAGUGGCuGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 135226 0.76 0.2764
Target:  5'- aGCGCCugaGCGGCUG-CGCCGGCGgcggcGACg -3'
miRNA:   3'- aCGCGG---CGCCGGCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 14753 0.75 0.288742
Target:  5'- gGCcgGCCGCGGCCGgggcgCGCCuuCGUGGCc -3'
miRNA:   3'- aCG--CGGCGCCGGCa----GUGGcuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 123600 0.75 0.288742
Target:  5'- aGcCGCCGCGGCCGUCAgCGG-GUgcGACa -3'
miRNA:   3'- aC-GCGGCGCCGGCAGUgGCUgCA--CUG- -5'
14503 5' -61.6 NC_003521.1 + 127068 0.75 0.288742
Target:  5'- gGUGCCGCGGCaggGcCACCGACGagaGGCg -3'
miRNA:   3'- aCGCGGCGCCGg--CaGUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 73184 0.75 0.288742
Target:  5'- cGCGgaGCuGGCCGgCAUCGACGUGACc -3'
miRNA:   3'- aCGCggCG-CCGGCaGUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 37112 0.75 0.294436
Target:  5'- gGCuGCUGCuGCCGUCGCUacuggcgGACGUGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGG-------CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 149404 0.75 0.295074
Target:  5'- cGUgGCCGUGGCCGUCACgGACGa--- -3'
miRNA:   3'- aCG-CGGCGCCGGCAGUGgCUGCacug -5'
14503 5' -61.6 NC_003521.1 + 136244 0.75 0.301513
Target:  5'- aUGaCGCaCGcCGGCCGcuaCGCCGACGUGAUu -3'
miRNA:   3'- -AC-GCG-GC-GCCGGCa--GUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 164451 0.75 0.301513
Target:  5'- cGCgGCCGCGGCCGUCACgGuCGccGCu -3'
miRNA:   3'- aCG-CGGCGCCGGCAGUGgCuGCacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.