miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 44054 0.75 0.30806
Target:  5'- cGCGcCCGCGGUCG-CGCCGGCcggGGCa -3'
miRNA:   3'- aCGC-GGCGCCGGCaGUGGCUGca-CUG- -5'
14503 5' -61.6 NC_003521.1 + 89614 0.75 0.30806
Target:  5'- gGCGCCGCGGU---CACCGugGUGGu -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCugCACUg -5'
14503 5' -61.6 NC_003521.1 + 187640 0.75 0.314715
Target:  5'- cGCGCCGCuGGCCaucuUCAUCGGCGagGGCg -3'
miRNA:   3'- aCGCGGCG-CCGGc---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 172786 0.75 0.321479
Target:  5'- gGCGCCGCGGaCCa-CGCCGccCGUGGCg -3'
miRNA:   3'- aCGCGGCGCC-GGcaGUGGCu-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 188662 0.75 0.32835
Target:  5'- gGCGgacCCGCGGuaCCGUCGCUGACG-GGCg -3'
miRNA:   3'- aCGC---GGCGCC--GGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 78459 0.75 0.32835
Target:  5'- gGCGCggcugggaaCGCGGCCcggCGCgCGACGUGACu -3'
miRNA:   3'- aCGCG---------GCGCCGGca-GUG-GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 77592 0.74 0.334626
Target:  5'- -cCGCCGUGGCCGaacccacgUCACCGGgcgcgccCGUGACg -3'
miRNA:   3'- acGCGGCGCCGGC--------AGUGGCU-------GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 172402 0.74 0.335329
Target:  5'- gGCGCCgGCGgaGCCGUCGCCG-CGgGACc -3'
miRNA:   3'- aCGCGG-CGC--CGGCAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 111236 0.74 0.335329
Target:  5'- aGCGUCGCGGCCGgCG-CGGCGcGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 133945 0.74 0.335329
Target:  5'- cUGCGCCGCuacuaCCGUCACCGuACG-GGCg -3'
miRNA:   3'- -ACGCGGCGcc---GGCAGUGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 36795 0.74 0.349611
Target:  5'- cGCGCUGCGgaGCCGcUCGCgGACGgcgGACu -3'
miRNA:   3'- aCGCGGCGC--CGGC-AGUGgCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 38062 0.74 0.359863
Target:  5'- cGCGCCuguacagggguugugGUGGCCGUCGCUGGCaaGACc -3'
miRNA:   3'- aCGCGG---------------CGCCGGCAGUGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 22398 0.74 0.363575
Target:  5'- gGUGCCGCcGCUGUCGCuggccaugcugcgCGGCGUGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCAGUG-------------GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 115101 0.74 0.36432
Target:  5'- cUGCGCCGUcGCCGcCcCCGuCGUGACc -3'
miRNA:   3'- -ACGCGGCGcCGGCaGuGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 167741 0.73 0.378686
Target:  5'- gGCGCUGCgguGGCCGgcggagcugagggUCACCGACaUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGC-------------AGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 177766 0.73 0.379452
Target:  5'- gGgGUCGCGGUCGUCgccaggGCCGACGgGGCc -3'
miRNA:   3'- aCgCGGCGCCGGCAG------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 224324 0.73 0.379452
Target:  5'- aGCGCCGCaGCCcgugcucguagcGUCGCCGcACGUaGACc -3'
miRNA:   3'- aCGCGGCGcCGG------------CAGUGGC-UGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 69182 0.73 0.387175
Target:  5'- -cCGCCGCGGCCG-CGcuagacauacCCGACGUcGGCg -3'
miRNA:   3'- acGCGGCGCCGGCaGU----------GGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 125406 0.73 0.387175
Target:  5'- cGCGCCGCGGCgcugaGUCcggagGCCGugGcGGCc -3'
miRNA:   3'- aCGCGGCGCCGg----CAG-----UGGCugCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 209723 0.73 0.394213
Target:  5'- uUGCGCCGCguguaccGGCCGcCGCCGuCGUcGCu -3'
miRNA:   3'- -ACGCGGCG-------CCGGCaGUGGCuGCAcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.