miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 58402 0.66 0.800568
Target:  5'- -cUGCCGCGGCCG-CGugaugCGGCGguUGACg -3'
miRNA:   3'- acGCGGCGCCGGCaGUg----GCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 114953 0.66 0.800568
Target:  5'- cGCGCagcgGCGGCUG-CugCGGCGUc-- -3'
miRNA:   3'- aCGCGg---CGCCGGCaGugGCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 233396 0.66 0.800568
Target:  5'- aGCuGCCGCuGCCGUC-UCGGCuccuggccccgGUGGCu -3'
miRNA:   3'- aCG-CGGCGcCGGCAGuGGCUG-----------CACUG- -5'
14503 5' -61.6 NC_003521.1 + 21774 0.66 0.800568
Target:  5'- gGCGCCGUGG-CGU-GCCugucCGUGGCg -3'
miRNA:   3'- aCGCGGCGCCgGCAgUGGcu--GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 196547 0.66 0.800568
Target:  5'- gGCGCCcagGUGcacGCUGaUCuccuCCGGCGUGACg -3'
miRNA:   3'- aCGCGG---CGC---CGGC-AGu---GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 90162 0.66 0.800568
Target:  5'- gGCGCCGCcGCCGgagaGCCGccuuCGUcGCg -3'
miRNA:   3'- aCGCGGCGcCGGCag--UGGCu---GCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 116380 0.66 0.800568
Target:  5'- gUGcCGCCGCGGCCcaaccacgucUCGCCgGACGagGAg -3'
miRNA:   3'- -AC-GCGGCGCCGGc---------AGUGG-CUGCa-CUg -5'
14503 5' -61.6 NC_003521.1 + 235100 0.66 0.800568
Target:  5'- cGCGCCGUgcccgGGCCGUacacauaACCccgGUGACg -3'
miRNA:   3'- aCGCGGCG-----CCGGCAg------UGGcugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 209858 0.66 0.800568
Target:  5'- cUGCuGCUGCGuGCCGagCGCCuGGCuUGGCa -3'
miRNA:   3'- -ACG-CGGCGC-CGGCa-GUGG-CUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 171863 0.66 0.800568
Target:  5'- aUGCGCaUGCuGGCCGUCucCCgGACcaGACg -3'
miRNA:   3'- -ACGCG-GCG-CCGGCAGu-GG-CUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 164485 0.66 0.800568
Target:  5'- gUGCGCaagaCGGCCugcgaguucGUCAagGGCGUGACg -3'
miRNA:   3'- -ACGCGgc--GCCGG---------CAGUggCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 128934 0.66 0.799734
Target:  5'- gGCGgCGCGGaagguaCGUCcgaacgaggggcuGgCGGCGUGGCg -3'
miRNA:   3'- aCGCgGCGCCg-----GCAG-------------UgGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 131711 0.66 0.799734
Target:  5'- cUGCcgGCCGUGGUgugcaacagcaauCGUCGCUGgACGUGcACg -3'
miRNA:   3'- -ACG--CGGCGCCG-------------GCAGUGGC-UGCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 75179 0.66 0.799734
Target:  5'- aGCGCgGCGugcuGCUGcucaacaccguguUCACCGugGUGcACg -3'
miRNA:   3'- aCGCGgCGC----CGGC-------------AGUGGCugCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 162234 0.66 0.795547
Target:  5'- aGCGCCGaCGGCgcuggcggggugggCGUCaacgggggugcgacACCGGCGccGACa -3'
miRNA:   3'- aCGCGGC-GCCG--------------GCAG--------------UGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 102130 0.66 0.792174
Target:  5'- cGUGCCGCccaggcucacGGCCuuGUCGCCGGUGaGGCu -3'
miRNA:   3'- aCGCGGCG----------CCGG--CAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 123248 0.66 0.792174
Target:  5'- aGCGCCGCGcccaguagacGCCGggaucguaggCuCCGAaGUGACg -3'
miRNA:   3'- aCGCGGCGC----------CGGCa---------GuGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 30239 0.66 0.792174
Target:  5'- cGCGCUGCaGGuCCG-CGCgGuugcCGUGGCg -3'
miRNA:   3'- aCGCGGCG-CC-GGCaGUGgCu---GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 49689 0.66 0.792174
Target:  5'- gGCGCUGUcGCCGUCagccuGCCaGAUG-GACa -3'
miRNA:   3'- aCGCGGCGcCGGCAG-----UGG-CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 76961 0.66 0.792174
Target:  5'- aGCauGUCGCGGCCGaugCGCgUGAUGcUGGCg -3'
miRNA:   3'- aCG--CGGCGCCGGCa--GUG-GCUGC-ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.