miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 22398 0.74 0.363575
Target:  5'- gGUGCCGCcGCUGUCGCuggccaugcugcgCGGCGUGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCAGUG-------------GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 26443 0.66 0.808831
Target:  5'- gGCGCuguuCGUGGCCuG-CAaCGGCGUGGCc -3'
miRNA:   3'- aCGCG----GCGCCGG-CaGUgGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 26499 0.67 0.745766
Target:  5'- gGCGCgaUGCGcucuucaccaccacGCUGcUCACCGugGUGAUg -3'
miRNA:   3'- aCGCG--GCGC--------------CGGC-AGUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 27751 0.73 0.402926
Target:  5'- aGCGCCGCGauGUCGUC-CCGACGgcGCa -3'
miRNA:   3'- aCGCGGCGC--CGGCAGuGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 28791 0.67 0.748468
Target:  5'- cUGCGCUcCGacaagcCCGUCACCGACGgccaguaccUGGCg -3'
miRNA:   3'- -ACGCGGcGCc-----GGCAGUGGCUGC---------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 29900 0.66 0.778485
Target:  5'- gGCGacgacgaccgacgacCCGUGGCCGUCAagGGCcUGGCa -3'
miRNA:   3'- aCGC---------------GGCGCCGGCAGUggCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 30239 0.66 0.792174
Target:  5'- cGCGCUGCaGGuCCG-CGCgGuugcCGUGGCg -3'
miRNA:   3'- aCGCGGCG-CC-GGCaGUGgCu---GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 30712 0.69 0.598221
Target:  5'- gGCGCCGCGGgC-UCAugUCG-CGUGACc -3'
miRNA:   3'- aCGCGGCGCCgGcAGU--GGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 31822 0.73 0.419078
Target:  5'- aGCGCCGUcucGGCCcgggCGCCGAagGUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGca--GUGGCUg-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 33457 0.68 0.664842
Target:  5'- cGCGCUGUucucggugucGGCCGgccgCGCCGACccgaggGACg -3'
miRNA:   3'- aCGCGGCG----------CCGGCa---GUGGCUGca----CUG- -5'
14503 5' -61.6 NC_003521.1 + 35482 0.67 0.757415
Target:  5'- gGCGCaGCuGCCGcCGCCGAgGaGGCg -3'
miRNA:   3'- aCGCGgCGcCGGCaGUGGCUgCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 36795 0.74 0.349611
Target:  5'- cGCGCUGCGgaGCCGcUCGCgGACGgcgGACu -3'
miRNA:   3'- aCGCGGCGC--CGGC-AGUGgCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 36840 0.69 0.588742
Target:  5'- gGCGCUGCuGuGCCGgguagagCACCuGACGUGGg -3'
miRNA:   3'- aCGCGGCG-C-CGGCa------GUGG-CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 37007 0.66 0.775016
Target:  5'- gGCGUCGCGGCggaGUCaggACCGACa---- -3'
miRNA:   3'- aCGCGGCGCCGg--CAG---UGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 37112 0.75 0.294436
Target:  5'- gGCuGCUGCuGCCGUCGCUacuggcgGACGUGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGG-------CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 38062 0.74 0.359863
Target:  5'- cGCGCCuguacagggguugugGUGGCCGUCGCUGGCaaGACc -3'
miRNA:   3'- aCGCGG---------------CGCCGGCAGUGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 39013 0.7 0.560491
Target:  5'- gGCGCUGCacGGCCGUCAgcagcgaCGGCGggugUGGCg -3'
miRNA:   3'- aCGCGGCG--CCGGCAGUg------GCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 39812 0.67 0.721122
Target:  5'- gGCGCCG-GGCgGUCcuCCGcCGaUGGCg -3'
miRNA:   3'- aCGCGGCgCCGgCAGu-GGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 39896 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 40363 0.67 0.757415
Target:  5'- gGCGCUGCgcagGGCCuucuccacgauGUCGgCGuCGUGGCg -3'
miRNA:   3'- aCGCGGCG----CCGG-----------CAGUgGCuGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.