miRNA display CGI


Results 1 - 20 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 1439 0.7 0.560491
Target:  5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3'
miRNA:   3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 3645 0.67 0.739431
Target:  5'- cGUGCCaCGGCCGcCGCCGucugccucgGCGgccggGACc -3'
miRNA:   3'- aCGCGGcGCCGGCaGUGGC---------UGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 6050 0.66 0.808831
Target:  5'- cGUGCCccaGCGGCCc-CGCagGGCGUGAUc -3'
miRNA:   3'- aCGCGG---CGCCGGcaGUGg-CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 6707 0.7 0.569871
Target:  5'- aGCGCUGCugGGUC-UCGCCGugGUG-Ca -3'
miRNA:   3'- aCGCGGCG--CCGGcAGUGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 7967 0.67 0.730313
Target:  5'- gGUGUCGCGGCCGggaggguccgCGgCGGCGgggGAg -3'
miRNA:   3'- aCGCGGCGCCGGCa---------GUgGCUGCa--CUg -5'
14503 5' -61.6 NC_003521.1 + 11735 0.72 0.435617
Target:  5'- gGCGa-GuCGGCCGUCAUCGACG-GGCc -3'
miRNA:   3'- aCGCggC-GCCGGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 13917 0.66 0.783654
Target:  5'- gGgGCCGCggaGGCCGcgcuggcCGCCGugGUGcCc -3'
miRNA:   3'- aCgCGGCG---CCGGCa------GUGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 14753 0.75 0.288742
Target:  5'- gGCcgGCCGCGGCCGgggcgCGCCuuCGUGGCc -3'
miRNA:   3'- aCG--CGGCGCCGGCa----GUGGcuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 16290 0.67 0.739431
Target:  5'- gGCGCCGUGGgUGcCuACCGGCccGGCg -3'
miRNA:   3'- aCGCGGCGCCgGCaG-UGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 16414 0.67 0.730313
Target:  5'- aGCGCC-UGGCCGgcgaggugUACCGGC-UGGCc -3'
miRNA:   3'- aCGCGGcGCCGGCa-------GUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 17754 0.67 0.711865
Target:  5'- --gGCCGgggaacUGGCCGUacCGCCGGCGgcgGACg -3'
miRNA:   3'- acgCGGC------GCCGGCA--GUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 17800 0.66 0.766268
Target:  5'- gGCG-UGCuGGCCGUgCgACCGGCG-GACg -3'
miRNA:   3'- aCGCgGCG-CCGGCA-G-UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 18071 0.68 0.683769
Target:  5'- cGaCGCCGUGGCCGUaGCCcaGACGgcGCg -3'
miRNA:   3'- aC-GCGGCGCCGGCAgUGG--CUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 18132 0.66 0.766268
Target:  5'- -aCGCC-CGGCCG-CACCGAgGUcGAg -3'
miRNA:   3'- acGCGGcGCCGGCaGUGGCUgCA-CUg -5'
14503 5' -61.6 NC_003521.1 + 18717 0.66 0.783654
Target:  5'- --gGCUGUGGCUGcCGCUGGCGgcGGCg -3'
miRNA:   3'- acgCGGCGCCGGCaGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 18902 0.73 0.419078
Target:  5'- gGCGCCGCGGCag-CcCCGAaggGUGGCg -3'
miRNA:   3'- aCGCGGCGCCGgcaGuGGCUg--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 20643 0.67 0.721122
Target:  5'- --aGCCGCGcGCUGgugggCGCCuACGUGAUg -3'
miRNA:   3'- acgCGGCGC-CGGCa----GUGGcUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 21286 0.67 0.748468
Target:  5'- aGCGCuuCGCGGUCuggCugCG-CGUGGCg -3'
miRNA:   3'- aCGCG--GCGCCGGca-GugGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 21774 0.66 0.800568
Target:  5'- gGCGCCGUGG-CGU-GCCugucCGUGGCg -3'
miRNA:   3'- aCGCGGCGCCgGCAgUGGcu--GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 22185 0.77 0.226041
Target:  5'- gGCGCCGcCGGCCGUgGCCGcuuaccgccgcGCGcUGGCg -3'
miRNA:   3'- aCGCGGC-GCCGGCAgUGGC-----------UGC-ACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.