miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 240123 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 240039 0.67 0.721122
Target:  5'- gGCGCCG-GGCgGUCcuCCGcCGaUGGCg -3'
miRNA:   3'- aCGCGGCgCCGgCAGu-GGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 239241 0.7 0.560491
Target:  5'- gGCGCUGCacGGCCGUCAgcagcgaCGGCGggugUGGCg -3'
miRNA:   3'- aCGCGGCG--CCGGCAGUg------GCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 236147 0.68 0.645822
Target:  5'- gGgGaCCGCGcGaCGUCGCCGGCGgGACc -3'
miRNA:   3'- aCgC-GGCGC-CgGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 235295 0.72 0.452526
Target:  5'- cGCGCCgGCuGCCGUCACCGuCGcuGCu -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 235100 0.66 0.800568
Target:  5'- cGCGCCGUgcccgGGCCGUacacauaACCccgGUGACg -3'
miRNA:   3'- aCGCGGCG-----CCGGCAg------UGGcugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 233396 0.66 0.800568
Target:  5'- aGCuGCCGCuGCCGUC-UCGGCuccuggccccgGUGGCu -3'
miRNA:   3'- aCG-CGGCGcCGGCAGuGGCUG-----------CACUG- -5'
14503 5' -61.6 NC_003521.1 + 233393 0.66 0.787076
Target:  5'- gUGCGCCGCGuCCGUgauggaacacaggggCAUCGuuuGCGUGGg -3'
miRNA:   3'- -ACGCGGCGCcGGCA---------------GUGGC---UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 233174 0.68 0.693181
Target:  5'- cGCGCCGCcguggcggccGCCGUUACCGucgguCGUucccGACa -3'
miRNA:   3'- aCGCGGCGc---------CGGCAGUGGCu----GCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 233044 0.67 0.729398
Target:  5'- aGCGCUGguguaaGGCuCGUCugCGGCGUcugcuggGACu -3'
miRNA:   3'- aCGCGGCg-----CCG-GCAGugGCUGCA-------CUG- -5'
14503 5' -61.6 NC_003521.1 + 232405 0.68 0.702548
Target:  5'- cUGCGCCuGCGGCaCGgcaacgccagCGCCuGCGUGuCg -3'
miRNA:   3'- -ACGCGG-CGCCG-GCa---------GUGGcUGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 226362 0.68 0.702548
Target:  5'- aGCGCCGCGGgaG-CGgCGGC-UGACg -3'
miRNA:   3'- aCGCGGCGCCggCaGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 226076 0.68 0.687539
Target:  5'- cGCcccgGCCGCGGCCGgcccgUCACgcccaacagauaccaCGGCGUGcACa -3'
miRNA:   3'- aCG----CGGCGCCGGC-----AGUG---------------GCUGCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 224724 0.66 0.800568
Target:  5'- cGC-CCGUGGUgcUCGCCGACGcaGGCg -3'
miRNA:   3'- aCGcGGCGCCGgcAGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 224324 0.73 0.379452
Target:  5'- aGCGCCGCaGCCcgugcucguagcGUCGCCGcACGUaGACc -3'
miRNA:   3'- aCGCGGCGcCGG------------CAGUGGC-UGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 224092 0.67 0.711865
Target:  5'- cGCGCgCGcCGGCgGUCGCCGAacuCGccGCg -3'
miRNA:   3'- aCGCG-GC-GCCGgCAGUGGCU---GCacUG- -5'
14503 5' -61.6 NC_003521.1 + 223782 0.66 0.766267
Target:  5'- gGCGCCGUuaccgccgugGGCCGcCAgaCGACG-GGCc -3'
miRNA:   3'- aCGCGGCG----------CCGGCaGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 223313 0.8 0.163301
Target:  5'- cGCGCCGCcgGGCCGggaACCGcCGUGACc -3'
miRNA:   3'- aCGCGGCG--CCGGCag-UGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 220652 0.67 0.721122
Target:  5'- cGCGaCGCGGaCCGUCgucGCCGuCGUcucGGCa -3'
miRNA:   3'- aCGCgGCGCC-GGCAG---UGGCuGCA---CUG- -5'
14503 5' -61.6 NC_003521.1 + 218233 0.7 0.551153
Target:  5'- gGCGaCCGCaggGGCCGUCACgGGUGcGACg -3'
miRNA:   3'- aCGC-GGCG---CCGGCAGUGgCUGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.