miRNA display CGI


Results 1 - 20 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 223313 0.8 0.163301
Target:  5'- cGCGCCGCcgGGCCGggaACCGcCGUGACc -3'
miRNA:   3'- aCGCGGCG--CCGGCag-UGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 167741 0.73 0.378686
Target:  5'- gGCGCUGCgguGGCCGgcggagcugagggUCACCGACaUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGC-------------AGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 125406 0.73 0.387175
Target:  5'- cGCGCCGCGGCgcugaGUCcggagGCCGugGcGGCc -3'
miRNA:   3'- aCGCGGCGCCGg----CAG-----UGGCugCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 212503 0.66 0.808831
Target:  5'- gGCGguCCGCaGGCCG-CGCCGGgGUcGCu -3'
miRNA:   3'- aCGC--GGCG-CCGGCaGUGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 135226 0.76 0.2764
Target:  5'- aGCGCCugaGCGGCUG-CGCCGGCGgcggcGACg -3'
miRNA:   3'- aCGCGG---CGCCGGCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 14753 0.75 0.288742
Target:  5'- gGCcgGCCGCGGCCGgggcgCGCCuuCGUGGCc -3'
miRNA:   3'- aCG--CGGCGCCGGCa----GUGGcuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 127068 0.75 0.288742
Target:  5'- gGUGCCGCGGCaggGcCACCGACGagaGGCg -3'
miRNA:   3'- aCGCGGCGCCGg--CaGUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 37112 0.75 0.294436
Target:  5'- gGCuGCUGCuGCCGUCGCUacuggcgGACGUGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGG-------CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 187640 0.75 0.314715
Target:  5'- cGCGCCGCuGGCCaucuUCAUCGGCGagGGCg -3'
miRNA:   3'- aCGCGGCG-CCGGc---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 22398 0.74 0.363575
Target:  5'- gGUGCCGCcGCUGUCGCuggccaugcugcgCGGCGUGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCAGUG-------------GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 111236 0.74 0.335329
Target:  5'- aGCGUCGCGGCCGgCG-CGGCGcGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 89614 0.75 0.30806
Target:  5'- gGCGCCGCGGU---CACCGugGUGGu -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCugCACUg -5'
14503 5' -61.6 NC_003521.1 + 22185 0.77 0.226041
Target:  5'- gGCGCCGcCGGCCGUgGCCGcuuaccgccgcGCGcUGGCg -3'
miRNA:   3'- aCGCGGC-GCCGGCAgUGGC-----------UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 172402 0.74 0.335329
Target:  5'- gGCGCCgGCGgaGCCGUCGCCG-CGgGACc -3'
miRNA:   3'- aCGCGG-CGC--CGGCAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 169550 0.77 0.247393
Target:  5'- cGUGCCGCGGCCcccgccucCGCCGAUGUuGGCg -3'
miRNA:   3'- aCGCGGCGCCGGca------GUGGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 44054 0.75 0.30806
Target:  5'- cGCGcCCGCGGUCG-CGCCGGCcggGGCa -3'
miRNA:   3'- aCGC-GGCGCCGGCaGUGGCUGca-CUG- -5'
14503 5' -61.6 NC_003521.1 + 36795 0.74 0.349611
Target:  5'- cGCGCUGCGgaGCCGcUCGCgGACGgcgGACu -3'
miRNA:   3'- aCGCGGCGC--CGGC-AGUGgCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 177766 0.73 0.379452
Target:  5'- gGgGUCGCGGUCGUCgccaggGCCGACGgGGCc -3'
miRNA:   3'- aCgCGGCGCCGGCAG------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 171653 0.76 0.252986
Target:  5'- cGCGCCGCGGCgggcgucgggagCGUCGgCGGCaUGACg -3'
miRNA:   3'- aCGCGGCGCCG------------GCAGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 123600 0.75 0.288742
Target:  5'- aGcCGCCGCGGCCGUCAgCGG-GUgcGACa -3'
miRNA:   3'- aC-GCGGCGCCGGCAGUgGCUgCA--CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.