miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 43119 0.69 0.607722
Target:  5'- aGCGCUGCGGCgagCGCuCGGCGcugGGCg -3'
miRNA:   3'- aCGCGGCGCCGgcaGUG-GCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 43341 0.7 0.532626
Target:  5'- cGCGCCGUccGGCC--CGCCGcGCGUGAa -3'
miRNA:   3'- aCGCGGCG--CCGGcaGUGGC-UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 43478 0.71 0.478543
Target:  5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3'
miRNA:   3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 43839 0.66 0.808831
Target:  5'- cGCcgGCCGCGGgcCCGUCACaGGCGccccGGCc -3'
miRNA:   3'- aCG--CGGCGCC--GGCAGUGgCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 44054 0.75 0.30806
Target:  5'- cGCGcCCGCGGUCG-CGCCGGCcggGGCa -3'
miRNA:   3'- aCGC-GGCGCCGGCaGUGGCUGca-CUG- -5'
14503 5' -61.6 NC_003521.1 + 44094 0.68 0.664842
Target:  5'- gGCGCCGCcGCCaccaccGUCGCCGcCGgUGAa -3'
miRNA:   3'- aCGCGGCGcCGG------CAGUGGCuGC-ACUg -5'
14503 5' -61.6 NC_003521.1 + 44421 0.67 0.757415
Target:  5'- cUGUGCCGCuGCC--CGCCcauCGUGACg -3'
miRNA:   3'- -ACGCGGCGcCGGcaGUGGcu-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 45322 0.68 0.702548
Target:  5'- aGCugGCCGaCGGCUacgaccucuUCGCCGACGUGGa -3'
miRNA:   3'- aCG--CGGC-GCCGGc--------AGUGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 48647 0.66 0.792174
Target:  5'- -cCGgUGUGGCCGcgACCGGCGcUGACa -3'
miRNA:   3'- acGCgGCGCCGGCagUGGCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 48780 0.67 0.757415
Target:  5'- gGaCGCCGCGucuGCCGcgcaCGCCGGCGgugcagaaccUGACg -3'
miRNA:   3'- aC-GCGGCGC---CGGCa---GUGGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 49589 0.72 0.469787
Target:  5'- aGUGCCGaggaaGG-CGUCACCGGCGcugggGACg -3'
miRNA:   3'- aCGCGGCg----CCgGCAGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 49689 0.66 0.792174
Target:  5'- gGCGCUGUcGCCGUCagccuGCCaGAUG-GACa -3'
miRNA:   3'- aCGCGGCGcCGGCAG-----UGG-CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 53075 0.68 0.67432
Target:  5'- gGCGCCGUuca-GUCGCUGgACGUGGCg -3'
miRNA:   3'- aCGCGGCGccggCAGUGGC-UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 53154 0.71 0.523445
Target:  5'- gGCGCguaacaguacaCGCGGCCGcccUCGCCGAUGaagaUGGCc -3'
miRNA:   3'- aCGCG-----------GCGCCGGC---AGUGGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 55477 0.67 0.745766
Target:  5'- cUGCGCCGCcuuGCCGUCcuccuggugcuccaGCCaGGCGUaguuGACc -3'
miRNA:   3'- -ACGCGGCGc--CGGCAG--------------UGG-CUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 57408 0.69 0.636295
Target:  5'- aGCGCCguGCGGUCGccCACCGucuCGcgGACg -3'
miRNA:   3'- aCGCGG--CGCCGGCa-GUGGCu--GCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 58402 0.66 0.800568
Target:  5'- -cUGCCGCGGCCG-CGugaugCGGCGguUGACg -3'
miRNA:   3'- acGCGGCGCCGGCaGUg----GCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 58829 0.72 0.444026
Target:  5'- cGCGUgGCGGCCGUgacguUACUGGCGcgGAUg -3'
miRNA:   3'- aCGCGgCGCCGGCA-----GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 58966 0.67 0.757415
Target:  5'- gGCGCgaagaaGCGcGCCGUCAggcacugguggUCGGCGUGGu -3'
miRNA:   3'- aCGCGg-----CGC-CGGCAGU-----------GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 59716 0.71 0.487378
Target:  5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3'
miRNA:   3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.