miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 168456 0.67 0.834217
Target:  5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3'
miRNA:   3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 187624 0.75 0.397292
Target:  5'- cGGGCGAGccGGGCCGCGcGccGCUGGc -3'
miRNA:   3'- -CUCGCUCcaCCCGGCGCuCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 187661 0.66 0.857032
Target:  5'- cGGCGAGG-GcGGCCGCGuGUacUGUUa- -3'
miRNA:   3'- cUCGCUCCaC-CCGGCGCuCA--ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 190531 0.66 0.864279
Target:  5'- gGAGCGAGGUGcGGCgGC-AGcaGCggcGGa -3'
miRNA:   3'- -CUCGCUCCAC-CCGgCGcUCaaCGa--CC- -5'
14514 3' -59.5 NC_003521.1 + 196070 0.68 0.757596
Target:  5'- cGGCGAGGUGGacuGgCGCGAGa-GCUGc -3'
miRNA:   3'- cUCGCUCCACC---CgGCGCUCaaCGACc -5'
14514 3' -59.5 NC_003521.1 + 196812 0.66 0.871337
Target:  5'- uGGGCGAGGgcaGGCCGUG-GUUGagcaGGc -3'
miRNA:   3'- -CUCGCUCCac-CCGGCGCuCAACga--CC- -5'
14514 3' -59.5 NC_003521.1 + 198781 0.71 0.595396
Target:  5'- uGGGCGAGGUGGGuaGC-AGcUGCgUGGu -3'
miRNA:   3'- -CUCGCUCCACCCggCGcUCaACG-ACC- -5'
14514 3' -59.5 NC_003521.1 + 201646 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 204723 0.68 0.775517
Target:  5'- cGGCGGGGaGGGUgGCGAGggugGUgaUGGa -3'
miRNA:   3'- cUCGCUCCaCCCGgCGCUCaa--CG--ACC- -5'
14514 3' -59.5 NC_003521.1 + 215421 0.67 0.826273
Target:  5'- uGGGCGAGcccuccGUGaagcagaGCCGCGGG-UGCUGGc -3'
miRNA:   3'- -CUCGCUC------CACc------CGGCGCUCaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 232546 0.66 0.857032
Target:  5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3'
miRNA:   3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.