miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 88648 0.66 0.871337
Target:  5'- cAGCGAGGcgcagaGGGCCGCcaGGUcGgUGGg -3'
miRNA:   3'- cUCGCUCCa-----CCCGGCGc-UCAaCgACC- -5'
14514 3' -59.5 NC_003521.1 + 91342 0.68 0.775517
Target:  5'- aGGCGAGGUGcuGGUCGgGAGgacGgUGGg -3'
miRNA:   3'- cUCGCUCCAC--CCGGCgCUCaa-CgACC- -5'
14514 3' -59.5 NC_003521.1 + 99340 0.68 0.783435
Target:  5'- cGGGUGAugaggaggaaggcGGUGaGGCUGCuguuGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-------------CCAC-CCGGCGcu--CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 100230 0.69 0.682548
Target:  5'- cGGCGAGGUGGaGCUggGCGAGgUGCc-- -3'
miRNA:   3'- cUCGCUCCACC-CGG--CGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 104682 0.68 0.739275
Target:  5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3'
miRNA:   3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5'
14514 3' -59.5 NC_003521.1 + 115473 0.68 0.748481
Target:  5'- cGAGCGcggacgaacAGcGUGGGCCGCGuGUcGCUc- -3'
miRNA:   3'- -CUCGC---------UC-CACCCGGCGCuCAaCGAcc -5'
14514 3' -59.5 NC_003521.1 + 117383 0.67 0.792977
Target:  5'- cGGUGcAGGUGcGGCaCGCGcugUGCUGGc -3'
miRNA:   3'- cUCGC-UCCAC-CCG-GCGCucaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 118013 0.66 0.878203
Target:  5'- cGGCGGcGUGucgcuGCCGCGGGacucggUGCUGGg -3'
miRNA:   3'- cUCGCUcCACc----CGGCGCUCa-----ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 118718 0.72 0.53901
Target:  5'- uGGGCGAgGGgcgcggcaccggcacGGGCUGCaGGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-CCa--------------CCCGGCGcUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 128263 0.66 0.871337
Target:  5'- aGGcCGuGGUGGGCaGCGcGUUGC-GGa -3'
miRNA:   3'- cUC-GCuCCACCCGgCGCuCAACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 137274 0.7 0.663257
Target:  5'- aGAGCGGGGgccccagcgaccUGGaGCUGCGGGUggcgcgGCUGc -3'
miRNA:   3'- -CUCGCUCC------------ACC-CGGCGCUCAa-----CGACc -5'
14514 3' -59.5 NC_003521.1 + 145659 0.69 0.711184
Target:  5'- -cGCGAGGUGcccucGGcCCGCGAGUuccUGCUc- -3'
miRNA:   3'- cuCGCUCCAC-----CC-GGCGCUCA---ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 146166 1.09 0.002322
Target:  5'- aGAGCGAGGUGGGCCGCGAGUUGCUGGc -3'
miRNA:   3'- -CUCGCUCCACCCGGCGCUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 148325 0.66 0.857032
Target:  5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 148368 0.66 0.841996
Target:  5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3'
miRNA:   3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5'
14514 3' -59.5 NC_003521.1 + 155386 0.66 0.857032
Target:  5'- cGGCGcGGacgacGaGGCCgGCGGGggGCUGGg -3'
miRNA:   3'- cUCGCuCCa----C-CCGG-CGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 155491 0.69 0.711184
Target:  5'- cGGCcugcGGcGGGCCGCGGGccaagGCUGGa -3'
miRNA:   3'- cUCGcu--CCaCCCGGCGCUCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 162248 0.66 0.878203
Target:  5'- uGGCGGGGUGGGCgucaaCGgGGG-UGCg-- -3'
miRNA:   3'- cUCGCUCCACCCG-----GCgCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 162886 0.67 0.826273
Target:  5'- -cGCGcAGGUGGGCCGCuacugccUGCaGGa -3'
miRNA:   3'- cuCGC-UCCACCCGGCGcuca---ACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 168422 0.67 0.826273
Target:  5'- aGGGCGGGcGgcaGGGCCGCGGcg-GCgGGc -3'
miRNA:   3'- -CUCGCUC-Ca--CCCGGCGCUcaaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.