miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 204723 0.68 0.775517
Target:  5'- cGGCGGGGaGGGUgGCGAGggugGUgaUGGa -3'
miRNA:   3'- cUCGCUCCaCCCGgCGCUCaa--CG--ACC- -5'
14514 3' -59.5 NC_003521.1 + 91342 0.68 0.775517
Target:  5'- aGGCGAGGUGcuGGUCGgGAGgacGgUGGg -3'
miRNA:   3'- cUCGCUCCAC--CCGGCgCUCaa-CgACC- -5'
14514 3' -59.5 NC_003521.1 + 99340 0.68 0.783435
Target:  5'- cGGGUGAugaggaggaaggcGGUGaGGCUGCuguuGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-------------CCAC-CCGGCGcu--CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 117383 0.67 0.792977
Target:  5'- cGGUGcAGGUGcGGCaCGCGcugUGCUGGc -3'
miRNA:   3'- cUCGC-UCCAC-CCG-GCGCucaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 74633 0.67 0.801515
Target:  5'- cAGCGGGGUGGuG-CGCGGGaccCUGGa -3'
miRNA:   3'- cUCGCUCCACC-CgGCGCUCaacGACC- -5'
14514 3' -59.5 NC_003521.1 + 23581 0.67 0.809915
Target:  5'- ---gGuGGUGGG-CGCGGGggUGCUGGc -3'
miRNA:   3'- cucgCuCCACCCgGCGCUCa-ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 162886 0.67 0.826273
Target:  5'- -cGCGcAGGUGGGCCGCuacugccUGCaGGa -3'
miRNA:   3'- cuCGC-UCCACCCGGCGcuca---ACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 215421 0.67 0.826273
Target:  5'- uGGGCGAGcccuccGUGaagcagaGCCGCGGG-UGCUGGc -3'
miRNA:   3'- -CUCGCUC------CACc------CGGCGCUCaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 7727 0.67 0.826273
Target:  5'- uGGGUGGGGaGGGCggCGCGAGcgGC-GGa -3'
miRNA:   3'- -CUCGCUCCaCCCG--GCGCUCaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 168422 0.67 0.826273
Target:  5'- aGGGCGGGcGgcaGGGCCGCGGcg-GCgGGc -3'
miRNA:   3'- -CUCGCUC-Ca--CCCGGCGCUcaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 77730 0.67 0.834217
Target:  5'- cGGCGGccucGGUGGGCgGCGucuGGUagugGUUGGg -3'
miRNA:   3'- cUCGCU----CCACCCGgCGC---UCAa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 168456 0.67 0.834217
Target:  5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3'
miRNA:   3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 148368 0.66 0.841996
Target:  5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3'
miRNA:   3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5'
14514 3' -59.5 NC_003521.1 + 35391 0.66 0.84885
Target:  5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3'
miRNA:   3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5'
14514 3' -59.5 NC_003521.1 + 53950 0.66 0.849603
Target:  5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3'
miRNA:   3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5'
14514 3' -59.5 NC_003521.1 + 148325 0.66 0.857032
Target:  5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 155386 0.66 0.857032
Target:  5'- cGGCGcGGacgacGaGGCCgGCGGGggGCUGGg -3'
miRNA:   3'- cUCGCuCCa----C-CCGG-CGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 232546 0.66 0.857032
Target:  5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3'
miRNA:   3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5'
14514 3' -59.5 NC_003521.1 + 187661 0.66 0.857032
Target:  5'- cGGCGAGG-GcGGCCGCGuGUacUGUUa- -3'
miRNA:   3'- cUCGCUCCaC-CCGGCGCuCA--ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 77040 0.66 0.864279
Target:  5'- cGGCGGuGGUGGcGCCGCuaccGUUGUUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGCGcu--CAACGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.