miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 146166 1.09 0.002322
Target:  5'- aGAGCGAGGUGGGCCGCGAGUUGCUGGc -3'
miRNA:   3'- -CUCGCUCCACCCGGCGCUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 68384 0.84 0.106399
Target:  5'- aGAGCGAGGUGGacGCCGUGAGaugccgGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--CGGCGCUCaa----CGACC- -5'
14514 3' -59.5 NC_003521.1 + 47852 0.76 0.343557
Target:  5'- cGGGUGaAGGaGGGUCGCGAGcaUGCUGGa -3'
miRNA:   3'- -CUCGC-UCCaCCCGGCGCUCa-ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 187624 0.75 0.397292
Target:  5'- cGGGCGAGccGGGCCGCGcGccGCUGGc -3'
miRNA:   3'- -CUCGCUCcaCCCGGCGCuCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 46431 0.74 0.421917
Target:  5'- -uGCGAGGguauccggcgGGGCUGCGGGg-GCUGGu -3'
miRNA:   3'- cuCGCUCCa---------CCCGGCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 118718 0.72 0.53901
Target:  5'- uGGGCGAgGGgcgcggcaccggcacGGGCUGCaGGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-CCa--------------CCCGGCGcUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 198781 0.71 0.595396
Target:  5'- uGGGCGAGGUGGGuaGC-AGcUGCgUGGu -3'
miRNA:   3'- -CUCGCUCCACCCggCGcUCaACG-ACC- -5'
14514 3' -59.5 NC_003521.1 + 18747 0.71 0.595396
Target:  5'- uGGCGGcGGUGGcGCCGaCGGGUcGCUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGC-GCUCAaCGACc -5'
14514 3' -59.5 NC_003521.1 + 13910 0.71 0.614759
Target:  5'- -cGCgGAGG-GGGCCGCGgAGgccgcGCUGGc -3'
miRNA:   3'- cuCG-CUCCaCCCGGCGC-UCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 56882 0.7 0.653574
Target:  5'- uGGCGAGGUGGaaaGCGAGa-GCUGGc -3'
miRNA:   3'- cUCGCUCCACCcggCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 137274 0.7 0.663257
Target:  5'- aGAGCGGGGgccccagcgaccUGGaGCUGCGGGUggcgcgGCUGc -3'
miRNA:   3'- -CUCGCUCC------------ACC-CGGCGCUCAa-----CGACc -5'
14514 3' -59.5 NC_003521.1 + 100230 0.69 0.682548
Target:  5'- cGGCGAGGUGGaGCUggGCGAGgUGCc-- -3'
miRNA:   3'- cUCGCUCCACC-CGG--CGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 145659 0.69 0.711184
Target:  5'- -cGCGAGGUGcccucGGcCCGCGAGUuccUGCUc- -3'
miRNA:   3'- cuCGCUCCAC-----CC-GGCGCUCA---ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 155491 0.69 0.711184
Target:  5'- cGGCcugcGGcGGGCCGCGGGccaagGCUGGa -3'
miRNA:   3'- cUCGcu--CCaCCCGGCGCUCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 201646 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 1419 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 104682 0.68 0.739275
Target:  5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3'
miRNA:   3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5'
14514 3' -59.5 NC_003521.1 + 115473 0.68 0.748481
Target:  5'- cGAGCGcggacgaacAGcGUGGGCCGCGuGUcGCUc- -3'
miRNA:   3'- -CUCGC---------UC-CACCCGGCGCuCAaCGAcc -5'
14514 3' -59.5 NC_003521.1 + 196070 0.68 0.757596
Target:  5'- cGGCGAGGUGGacuGgCGCGAGa-GCUGc -3'
miRNA:   3'- cUCGCUCCACC---CgGCGCUCaaCGACc -5'
14514 3' -59.5 NC_003521.1 + 31669 0.68 0.76661
Target:  5'- -cGCGAGGUGaGCCGCGAuucgGCUa- -3'
miRNA:   3'- cuCGCUCCACcCGGCGCUcaa-CGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.