miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 128263 0.66 0.871337
Target:  5'- aGGcCGuGGUGGGCaGCGcGUUGC-GGa -3'
miRNA:   3'- cUC-GCuCCACCCGgCGCuCAACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 74633 0.67 0.801515
Target:  5'- cAGCGGGGUGGuG-CGCGGGaccCUGGa -3'
miRNA:   3'- cUCGCUCCACC-CgGCGCUCaacGACC- -5'
14514 3' -59.5 NC_003521.1 + 168422 0.67 0.826273
Target:  5'- aGGGCGGGcGgcaGGGCCGCGGcg-GCgGGc -3'
miRNA:   3'- -CUCGCUC-Ca--CCCGGCGCUcaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 215421 0.67 0.826273
Target:  5'- uGGGCGAGcccuccGUGaagcagaGCCGCGGG-UGCUGGc -3'
miRNA:   3'- -CUCGCUC------CACc------CGGCGCUCaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 168456 0.67 0.834217
Target:  5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3'
miRNA:   3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 77730 0.67 0.834217
Target:  5'- cGGCGGccucGGUGGGCgGCGucuGGUagugGUUGGg -3'
miRNA:   3'- cUCGCU----CCACCCGgCGC---UCAa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 35391 0.66 0.84885
Target:  5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3'
miRNA:   3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5'
14514 3' -59.5 NC_003521.1 + 232546 0.66 0.857032
Target:  5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3'
miRNA:   3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5'
14514 3' -59.5 NC_003521.1 + 18258 0.66 0.87064
Target:  5'- cGAGCGGuGGUGGGgaccugcCCGCGAcg-GgaGGg -3'
miRNA:   3'- -CUCGCU-CCACCC-------GGCGCUcaaCgaCC- -5'
14514 3' -59.5 NC_003521.1 + 99340 0.68 0.783435
Target:  5'- cGGGUGAugaggaggaaggcGGUGaGGCUGCuguuGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-------------CCAC-CCGGCGcu--CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 91342 0.68 0.775517
Target:  5'- aGGCGAGGUGcuGGUCGgGAGgacGgUGGg -3'
miRNA:   3'- cUCGCUCCAC--CCGGCgCUCaa-CgACC- -5'
14514 3' -59.5 NC_003521.1 + 104682 0.68 0.739275
Target:  5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3'
miRNA:   3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5'
14514 3' -59.5 NC_003521.1 + 46431 0.74 0.421917
Target:  5'- -uGCGAGGguauccggcgGGGCUGCGGGg-GCUGGu -3'
miRNA:   3'- cuCGCUCCa---------CCCGGCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 118718 0.72 0.53901
Target:  5'- uGGGCGAgGGgcgcggcaccggcacGGGCUGCaGGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-CCa--------------CCCGGCGcUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 18747 0.71 0.595396
Target:  5'- uGGCGGcGGUGGcGCCGaCGGGUcGCUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGC-GCUCAaCGACc -5'
14514 3' -59.5 NC_003521.1 + 56882 0.7 0.653574
Target:  5'- uGGCGAGGUGGaaaGCGAGa-GCUGGc -3'
miRNA:   3'- cUCGCUCCACCcggCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 137274 0.7 0.663257
Target:  5'- aGAGCGGGGgccccagcgaccUGGaGCUGCGGGUggcgcgGCUGc -3'
miRNA:   3'- -CUCGCUCC------------ACC-CGGCGCUCAa-----CGACc -5'
14514 3' -59.5 NC_003521.1 + 100230 0.69 0.682548
Target:  5'- cGGCGAGGUGGaGCUggGCGAGgUGCc-- -3'
miRNA:   3'- cUCGCUCCACC-CGG--CGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 145659 0.69 0.711184
Target:  5'- -cGCGAGGUGcccucGGcCCGCGAGUuccUGCUc- -3'
miRNA:   3'- cuCGCUCCAC-----CC-GGCGCUCA---ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 201646 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.