Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14514 | 3' | -59.5 | NC_003521.1 | + | 1419 | 0.69 | 0.729985 |
Target: 5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3' miRNA: 3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 7727 | 0.67 | 0.826273 |
Target: 5'- uGGGUGGGGaGGGCggCGCGAGcgGC-GGa -3' miRNA: 3'- -CUCGCUCCaCCCG--GCGCUCaaCGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 13608 | 0.66 | 0.87548 |
Target: 5'- cGAGUGGaauGG-GGGgCGCGAGgcuauaaacuggGCUGGg -3' miRNA: 3'- -CUCGCU---CCaCCCgGCGCUCaa----------CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 13910 | 0.71 | 0.614759 |
Target: 5'- -cGCgGAGG-GGGCCGCGgAGgccgcGCUGGc -3' miRNA: 3'- cuCG-CUCCaCCCGGCGC-UCaa---CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 18258 | 0.66 | 0.87064 |
Target: 5'- cGAGCGGuGGUGGGgaccugcCCGCGAcg-GgaGGg -3' miRNA: 3'- -CUCGCU-CCACCC-------GGCGCUcaaCgaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 18747 | 0.71 | 0.595396 |
Target: 5'- uGGCGGcGGUGGcGCCGaCGGGUcGCUGc -3' miRNA: 3'- cUCGCU-CCACC-CGGC-GCUCAaCGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 23581 | 0.67 | 0.809915 |
Target: 5'- ---gGuGGUGGG-CGCGGGggUGCUGGc -3' miRNA: 3'- cucgCuCCACCCgGCGCUCa-ACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 31669 | 0.68 | 0.76661 |
Target: 5'- -cGCGAGGUGaGCCGCGAuucgGCUa- -3' miRNA: 3'- cuCGCUCCACcCGGCGCUcaa-CGAcc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 35391 | 0.66 | 0.84885 |
Target: 5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3' miRNA: 3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 45437 | 0.66 | 0.871337 |
Target: 5'- cGGCGcGGUcauGGCCucgccgugGCGuGUUGCUGGa -3' miRNA: 3'- cUCGCuCCAc--CCGG--------CGCuCAACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 46431 | 0.74 | 0.421917 |
Target: 5'- -uGCGAGGguauccggcgGGGCUGCGGGg-GCUGGu -3' miRNA: 3'- cuCGCUCCa---------CCCGGCGCUCaaCGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 47852 | 0.76 | 0.343557 |
Target: 5'- cGGGUGaAGGaGGGUCGCGAGcaUGCUGGa -3' miRNA: 3'- -CUCGC-UCCaCCCGGCGCUCa-ACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 49974 | 0.66 | 0.871337 |
Target: 5'- cGAGCGgcGGGUGGGUCGa-GGgaGCcGGg -3' miRNA: 3'- -CUCGC--UCCACCCGGCgcUCaaCGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 53950 | 0.66 | 0.849603 |
Target: 5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3' miRNA: 3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 56882 | 0.7 | 0.653574 |
Target: 5'- uGGCGAGGUGGaaaGCGAGa-GCUGGc -3' miRNA: 3'- cUCGCUCCACCcggCGCUCaaCGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 68384 | 0.84 | 0.106399 |
Target: 5'- aGAGCGAGGUGGacGCCGUGAGaugccgGCUGGg -3' miRNA: 3'- -CUCGCUCCACC--CGGCGCUCaa----CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 74633 | 0.67 | 0.801515 |
Target: 5'- cAGCGGGGUGGuG-CGCGGGaccCUGGa -3' miRNA: 3'- cUCGCUCCACC-CgGCGCUCaacGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 77040 | 0.66 | 0.864279 |
Target: 5'- cGGCGGuGGUGGcGCCGCuaccGUUGUUGc -3' miRNA: 3'- cUCGCU-CCACC-CGGCGcu--CAACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 77730 | 0.67 | 0.834217 |
Target: 5'- cGGCGGccucGGUGGGCgGCGucuGGUagugGUUGGg -3' miRNA: 3'- cUCGCU----CCACCCGgCGC---UCAa---CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 84758 | 0.66 | 0.871337 |
Target: 5'- cGGGCGcGGc-GGCgGCGAcGUUGUUGGc -3' miRNA: 3'- -CUCGCuCCacCCGgCGCU-CAACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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