miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 232546 0.66 0.857032
Target:  5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3'
miRNA:   3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5'
14514 3' -59.5 NC_003521.1 + 215421 0.67 0.826273
Target:  5'- uGGGCGAGcccuccGUGaagcagaGCCGCGGG-UGCUGGc -3'
miRNA:   3'- -CUCGCUC------CACc------CGGCGCUCaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 204723 0.68 0.775517
Target:  5'- cGGCGGGGaGGGUgGCGAGggugGUgaUGGa -3'
miRNA:   3'- cUCGCUCCaCCCGgCGCUCaa--CG--ACC- -5'
14514 3' -59.5 NC_003521.1 + 201646 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 198781 0.71 0.595396
Target:  5'- uGGGCGAGGUGGGuaGC-AGcUGCgUGGu -3'
miRNA:   3'- -CUCGCUCCACCCggCGcUCaACG-ACC- -5'
14514 3' -59.5 NC_003521.1 + 196812 0.66 0.871337
Target:  5'- uGGGCGAGGgcaGGCCGUG-GUUGagcaGGc -3'
miRNA:   3'- -CUCGCUCCac-CCGGCGCuCAACga--CC- -5'
14514 3' -59.5 NC_003521.1 + 196070 0.68 0.757596
Target:  5'- cGGCGAGGUGGacuGgCGCGAGa-GCUGc -3'
miRNA:   3'- cUCGCUCCACC---CgGCGCUCaaCGACc -5'
14514 3' -59.5 NC_003521.1 + 190531 0.66 0.864279
Target:  5'- gGAGCGAGGUGcGGCgGC-AGcaGCggcGGa -3'
miRNA:   3'- -CUCGCUCCAC-CCGgCGcUCaaCGa--CC- -5'
14514 3' -59.5 NC_003521.1 + 187661 0.66 0.857032
Target:  5'- cGGCGAGG-GcGGCCGCGuGUacUGUUa- -3'
miRNA:   3'- cUCGCUCCaC-CCGGCGCuCA--ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 187624 0.75 0.397292
Target:  5'- cGGGCGAGccGGGCCGCGcGccGCUGGc -3'
miRNA:   3'- -CUCGCUCcaCCCGGCGCuCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 168456 0.67 0.834217
Target:  5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3'
miRNA:   3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 168422 0.67 0.826273
Target:  5'- aGGGCGGGcGgcaGGGCCGCGGcg-GCgGGc -3'
miRNA:   3'- -CUCGCUC-Ca--CCCGGCGCUcaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 162886 0.67 0.826273
Target:  5'- -cGCGcAGGUGGGCCGCuacugccUGCaGGa -3'
miRNA:   3'- cuCGC-UCCACCCGGCGcuca---ACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 162248 0.66 0.878203
Target:  5'- uGGCGGGGUGGGCgucaaCGgGGG-UGCg-- -3'
miRNA:   3'- cUCGCUCCACCCG-----GCgCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 155491 0.69 0.711184
Target:  5'- cGGCcugcGGcGGGCCGCGGGccaagGCUGGa -3'
miRNA:   3'- cUCGcu--CCaCCCGGCGCUCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 155386 0.66 0.857032
Target:  5'- cGGCGcGGacgacGaGGCCgGCGGGggGCUGGg -3'
miRNA:   3'- cUCGCuCCa----C-CCGG-CGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 148368 0.66 0.841996
Target:  5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3'
miRNA:   3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5'
14514 3' -59.5 NC_003521.1 + 148325 0.66 0.857032
Target:  5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 146166 1.09 0.002322
Target:  5'- aGAGCGAGGUGGGCCGCGAGUUGCUGGc -3'
miRNA:   3'- -CUCGCUCCACCCGGCGCUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 145659 0.69 0.711184
Target:  5'- -cGCGAGGUGcccucGGcCCGCGAGUuccUGCUc- -3'
miRNA:   3'- cuCGCUCCAC-----CC-GGCGCUCA---ACGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.