Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14514 | 3' | -59.5 | NC_003521.1 | + | 77730 | 0.67 | 0.834217 |
Target: 5'- cGGCGGccucGGUGGGCgGCGucuGGUagugGUUGGg -3' miRNA: 3'- cUCGCU----CCACCCGgCGC---UCAa---CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 162886 | 0.67 | 0.826273 |
Target: 5'- -cGCGcAGGUGGGCCGCuacugccUGCaGGa -3' miRNA: 3'- cuCGC-UCCACCCGGCGcuca---ACGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 7727 | 0.67 | 0.826273 |
Target: 5'- uGGGUGGGGaGGGCggCGCGAGcgGC-GGa -3' miRNA: 3'- -CUCGCUCCaCCCG--GCGCUCaaCGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 215421 | 0.67 | 0.826273 |
Target: 5'- uGGGCGAGcccuccGUGaagcagaGCCGCGGG-UGCUGGc -3' miRNA: 3'- -CUCGCUC------CACc------CGGCGCUCaACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 168422 | 0.67 | 0.826273 |
Target: 5'- aGGGCGGGcGgcaGGGCCGCGGcg-GCgGGc -3' miRNA: 3'- -CUCGCUC-Ca--CCCGGCGCUcaaCGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 23581 | 0.67 | 0.809915 |
Target: 5'- ---gGuGGUGGG-CGCGGGggUGCUGGc -3' miRNA: 3'- cucgCuCCACCCgGCGCUCa-ACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 74633 | 0.67 | 0.801515 |
Target: 5'- cAGCGGGGUGGuG-CGCGGGaccCUGGa -3' miRNA: 3'- cUCGCUCCACC-CgGCGCUCaacGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 117383 | 0.67 | 0.792977 |
Target: 5'- cGGUGcAGGUGcGGCaCGCGcugUGCUGGc -3' miRNA: 3'- cUCGC-UCCAC-CCG-GCGCucaACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 99340 | 0.68 | 0.783435 |
Target: 5'- cGGGUGAugaggaggaaggcGGUGaGGCUGCuguuGUUGCUGGu -3' miRNA: 3'- -CUCGCU-------------CCAC-CCGGCGcu--CAACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 91342 | 0.68 | 0.775517 |
Target: 5'- aGGCGAGGUGcuGGUCGgGAGgacGgUGGg -3' miRNA: 3'- cUCGCUCCAC--CCGGCgCUCaa-CgACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 204723 | 0.68 | 0.775517 |
Target: 5'- cGGCGGGGaGGGUgGCGAGggugGUgaUGGa -3' miRNA: 3'- cUCGCUCCaCCCGgCGCUCaa--CG--ACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 31669 | 0.68 | 0.76661 |
Target: 5'- -cGCGAGGUGaGCCGCGAuucgGCUa- -3' miRNA: 3'- cuCGCUCCACcCGGCGCUcaa-CGAcc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 196070 | 0.68 | 0.757596 |
Target: 5'- cGGCGAGGUGGacuGgCGCGAGa-GCUGc -3' miRNA: 3'- cUCGCUCCACC---CgGCGCUCaaCGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 115473 | 0.68 | 0.748481 |
Target: 5'- cGAGCGcggacgaacAGcGUGGGCCGCGuGUcGCUc- -3' miRNA: 3'- -CUCGC---------UC-CACCCGGCGCuCAaCGAcc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 104682 | 0.68 | 0.739275 |
Target: 5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3' miRNA: 3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 1419 | 0.69 | 0.729985 |
Target: 5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3' miRNA: 3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 201646 | 0.69 | 0.729985 |
Target: 5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3' miRNA: 3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 155491 | 0.69 | 0.711184 |
Target: 5'- cGGCcugcGGcGGGCCGCGGGccaagGCUGGa -3' miRNA: 3'- cUCGcu--CCaCCCGGCGCUCaa---CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 145659 | 0.69 | 0.711184 |
Target: 5'- -cGCGAGGUGcccucGGcCCGCGAGUuccUGCUc- -3' miRNA: 3'- cuCGCUCCAC-----CC-GGCGCUCA---ACGAcc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 100230 | 0.69 | 0.682548 |
Target: 5'- cGGCGAGGUGGaGCUggGCGAGgUGCc-- -3' miRNA: 3'- cUCGCUCCACC-CGG--CGCUCaACGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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