miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 223160 0.66 0.968168
Target:  5'- cGCCCg-CAGuCUGgaGGCCGCAUCgCUCa -3'
miRNA:   3'- -CGGGaaGUU-GACg-CUGGUGUAGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 202626 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5'
14514 5' -55.1 NC_003521.1 + 103009 0.66 0.968168
Target:  5'- cGCCUUaauaaugCAGCUGCG-CU-CGUCCgCCCg -3'
miRNA:   3'- -CGGGAa------GUUGACGCuGGuGUAGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 152502 0.66 0.968168
Target:  5'- uGCgCUUCGGCga-GAcCCGCAUCCUCa -3'
miRNA:   3'- -CGgGAAGUUGacgCU-GGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 8534 0.66 0.968168
Target:  5'- uGCCCggaccgUgGGC-GCGACgACAUCCaCCg -3'
miRNA:   3'- -CGGGa-----AgUUGaCGCUGgUGUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 60547 0.67 0.965105
Target:  5'- uGCUgcUCAACgUGCGcGCCuACuUCCCCCu -3'
miRNA:   3'- -CGGgaAGUUG-ACGC-UGG-UGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 83778 0.67 0.965105
Target:  5'- cGCCCccCGccgcGCUccucCGACCGCG-CCCCCg -3'
miRNA:   3'- -CGGGaaGU----UGAc---GCUGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 237388 0.67 0.965105
Target:  5'- uGCCCUcggcgUCGGCaugGCGggggucugagugGCCcCAUCCCCg -3'
miRNA:   3'- -CGGGA-----AGUUGa--CGC------------UGGuGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 184111 0.67 0.965105
Target:  5'- gGCUCgacgUCGAC-GCGACCAgcguCAUCCgCUg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUGGU----GUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 53226 0.67 0.965105
Target:  5'- aGUCCgcgGGCgaaGCGACCGCcggcgaagCCCCCg -3'
miRNA:   3'- -CGGGaagUUGa--CGCUGGUGua------GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 194001 0.67 0.963824
Target:  5'- cUCCUUCAGCgucgucaccggcgGCGGCguCAUCCagaCCa -3'
miRNA:   3'- cGGGAAGUUGa------------CGCUGguGUAGGg--GG- -5'
14514 5' -55.1 NC_003521.1 + 121495 0.67 0.961842
Target:  5'- cCCCUgccCGACcGCGugCGCAUCaccaUCCg -3'
miRNA:   3'- cGGGAa--GUUGaCGCugGUGUAGg---GGG- -5'
14514 5' -55.1 NC_003521.1 + 30308 0.67 0.961842
Target:  5'- aGCUCUUCAGCa--GACCGCG-CUCCa -3'
miRNA:   3'- -CGGGAAGUUGacgCUGGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 96124 0.67 0.961842
Target:  5'- cGCCCcaCAugaugGCGGCgGCGUCCCgCu -3'
miRNA:   3'- -CGGGaaGUuga--CGCUGgUGUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 138826 0.67 0.960479
Target:  5'- cGCCCUgugccuggacacgCAGCUGC-ACCGCcugcuggaCCCCa -3'
miRNA:   3'- -CGGGAa------------GUUGACGcUGGUGuag-----GGGG- -5'
14514 5' -55.1 NC_003521.1 + 53446 0.67 0.958372
Target:  5'- cGUUCacCAGCUcgGCGGCCaggGCGUCCUCCa -3'
miRNA:   3'- -CGGGaaGUUGA--CGCUGG---UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 164502 0.67 0.958372
Target:  5'- cGCCUccgCAGCUGUcGCCGCcaCCUCCg -3'
miRNA:   3'- -CGGGaa-GUUGACGcUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 90502 0.67 0.958372
Target:  5'- aGCCCgaaAACUGUcaGGUCACG-CCCCCu -3'
miRNA:   3'- -CGGGaagUUGACG--CUGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 17377 0.67 0.958372
Target:  5'- gGCCCagacUCGAgaGgGACCGC-UCCCUa -3'
miRNA:   3'- -CGGGa---AGUUgaCgCUGGUGuAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 91761 0.67 0.958372
Target:  5'- aCCCU---ACcccGCGGgucCCGCAUCCCCCc -3'
miRNA:   3'- cGGGAaguUGa--CGCU---GGUGUAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.