miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 94010 0.66 0.973711
Target:  5'- cGCCCUUCcGgaGUGACgCACAUagcucgccggggCCCgCCu -3'
miRNA:   3'- -CGGGAAGuUgaCGCUG-GUGUA------------GGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 103576 0.66 0.973711
Target:  5'- cGCCCgcgCAgaaGCUGCGcACgUAC-UCCUCCa -3'
miRNA:   3'- -CGGGaa-GU---UGACGC-UG-GUGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 130482 0.66 0.973191
Target:  5'- uGCUCUUCGGCgaccugucacgcGUGGCCuuCAaggCCCCCu -3'
miRNA:   3'- -CGGGAAGUUGa-----------CGCUGGu-GUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 95207 0.66 0.973191
Target:  5'- cGCCCggcaccgggugCGACUGCagcagcgaGGCCACggCCgCCg -3'
miRNA:   3'- -CGGGaa---------GUUGACG--------CUGGUGuaGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 206342 0.66 0.971034
Target:  5'- uGCUCUgcuuccgCGAgcugcuggcCUGCGGCgACGaCCCCCa -3'
miRNA:   3'- -CGGGAa------GUU---------GACGCUGgUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 28520 0.66 0.971034
Target:  5'- cGCCCUUCAGgUccugaugauccGCGACaCGCugaugAUCCUCUa -3'
miRNA:   3'- -CGGGAAGUUgA-----------CGCUG-GUG-----UAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 72387 0.66 0.971034
Target:  5'- cGCUCUUCAcgcccgccGCcGCGGCCcuGCcgCCCgCCc -3'
miRNA:   3'- -CGGGAAGU--------UGaCGCUGG--UGuaGGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 155165 0.66 0.971034
Target:  5'- gGCUCggaaCAGCUgGCGGCCGCggCUgCCg -3'
miRNA:   3'- -CGGGaa--GUUGA-CGCUGGUGuaGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 111910 0.66 0.971034
Target:  5'- cGCCCgcuUCGAcCUGUGuACCgacGCcgCCCUCg -3'
miRNA:   3'- -CGGGa--AGUU-GACGC-UGG---UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 115092 0.66 0.971034
Target:  5'- aCCCUgCucCUGCGccgUCGCcgCCCCCg -3'
miRNA:   3'- cGGGAaGuuGACGCu--GGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 70813 0.66 0.971034
Target:  5'- gGCCCgaagaggcgCAGCaa-GGCCucauggaaaGCGUCCCCCg -3'
miRNA:   3'- -CGGGaa-------GUUGacgCUGG---------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 169546 0.66 0.971034
Target:  5'- gGCCCgu--GCcGCGGCCcCcgCCUCCg -3'
miRNA:   3'- -CGGGaaguUGaCGCUGGuGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 19499 0.66 0.970756
Target:  5'- aGCCUUcuuccucUCAGCUGUcgcggGACUACuggCCCUCg -3'
miRNA:   3'- -CGGGA-------AGUUGACG-----CUGGUGua-GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 129411 0.66 0.970195
Target:  5'- cGCCCgcuugCAgaaaugggggagccGCUGC-AgCGCGUCCCCUc -3'
miRNA:   3'- -CGGGaa---GU--------------UGACGcUgGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 80483 0.66 0.968168
Target:  5'- cGCCC-UCGACgacggagGCcACCGCG-CCgCCCa -3'
miRNA:   3'- -CGGGaAGUUGa------CGcUGGUGUaGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 202626 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5'
14514 5' -55.1 NC_003521.1 + 103009 0.66 0.968168
Target:  5'- cGCCUUaauaaugCAGCUGCG-CU-CGUCCgCCCg -3'
miRNA:   3'- -CGGGAa------GUUGACGCuGGuGUAGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 27952 0.66 0.968168
Target:  5'- cGCCCgcgUCcACgacGaCGACCAUAccgcugCCCCCc -3'
miRNA:   3'- -CGGGa--AGuUGa--C-GCUGGUGUa-----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 152502 0.66 0.968168
Target:  5'- uGCgCUUCGGCga-GAcCCGCAUCCUCa -3'
miRNA:   3'- -CGgGAAGUUGacgCU-GGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 2399 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.