miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 226706 0.74 0.660138
Target:  5'- aGCCCUUCGGCg--GACCcagacacaggcaGCGUCCCUCg -3'
miRNA:   3'- -CGGGAAGUUGacgCUGG------------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 174693 0.76 0.5907
Target:  5'- gGUCCUUCAgacACUGCaGCCACAggUCCCUa -3'
miRNA:   3'- -CGGGAAGU---UGACGcUGGUGU--AGGGGg -5'
14514 5' -55.1 NC_003521.1 + 89784 0.78 0.457763
Target:  5'- gGCgCUUUCAAC-GCGACCACGcggUUCCCCg -3'
miRNA:   3'- -CG-GGAAGUUGaCGCUGGUGU---AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 84684 0.78 0.448847
Target:  5'- cGCCag-CAGCUGCGugCACA-CCUCCa -3'
miRNA:   3'- -CGGgaaGUUGACGCugGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 126069 0.81 0.335137
Target:  5'- uGUCCagCAGCUGUGGCCGCGccaCCCCCa -3'
miRNA:   3'- -CGGGaaGUUGACGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 167415 0.72 0.78415
Target:  5'- gGCgCUUCGGCUGCuGuccuCCcCAUCCUCCg -3'
miRNA:   3'- -CGgGAAGUUGACG-Cu---GGuGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204406 0.72 0.78415
Target:  5'- gGCCCUcCGACcGCGAaauCCACG-CCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGCU---GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 50252 0.7 0.879974
Target:  5'- cGCCCUcgaUCAcgccguacugccGCUGCaGCCGgGUCCgCCg -3'
miRNA:   3'- -CGGGA---AGU------------UGACGcUGGUgUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 137154 0.7 0.872998
Target:  5'- cGCCCgcCAugGCcGCGGCCGCAgcggCCgCCg -3'
miRNA:   3'- -CGGGaaGU--UGaCGCUGGUGUa---GGgGG- -5'
14514 5' -55.1 NC_003521.1 + 99622 0.7 0.865819
Target:  5'- cGCCCggCGGCgcaGCG-CCACggCCaCCCg -3'
miRNA:   3'- -CGGGaaGUUGa--CGCuGGUGuaGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 85551 0.7 0.865819
Target:  5'- uGCCCagCGACgggccugagGCGccgccGCCGCcgCCCCCc -3'
miRNA:   3'- -CGGGaaGUUGa--------CGC-----UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 235200 0.7 0.865819
Target:  5'- cGCCCUguggugCGACUGCGACgaguggcaguCGCA-CCUCUa -3'
miRNA:   3'- -CGGGAa-----GUUGACGCUG----------GUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 63329 0.7 0.858442
Target:  5'- uGCCUggagagCGACUGCGAUCcCA-CCUCCa -3'
miRNA:   3'- -CGGGaa----GUUGACGCUGGuGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 144847 0.7 0.848564
Target:  5'- uGCCCUUCAcggucCUGCGccugucguacgccuACCGCAUCUUCg -3'
miRNA:   3'- -CGGGAAGUu----GACGC--------------UGGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 156568 0.71 0.843115
Target:  5'- uGCCCagCGACcGCcAUCGCAUCCaCCCc -3'
miRNA:   3'- -CGGGaaGUUGaCGcUGGUGUAGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 80995 0.71 0.843115
Target:  5'- gGCCCUUCucCUugGUGugCAUGUCCCgCa -3'
miRNA:   3'- -CGGGAAGuuGA--CGCugGUGUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 118912 0.71 0.808643
Target:  5'- cGCCCUcgUCGGCgccgcggcguggGCGGCgGCGUCCCg- -3'
miRNA:   3'- -CGGGA--AGUUGa-----------CGCUGgUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 163577 0.72 0.801758
Target:  5'- cCCCUUCcccccGugUGUGcCCuguCGUCCCCCg -3'
miRNA:   3'- cGGGAAG-----UugACGCuGGu--GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138865 0.72 0.793023
Target:  5'- uGCaCCUUCuGCguggaucacgGCGGCCACGUggaCCCCa -3'
miRNA:   3'- -CG-GGAAGuUGa---------CGCUGGUGUAg--GGGG- -5'
14514 5' -55.1 NC_003521.1 + 167829 0.72 0.793023
Target:  5'- aGCCagagCAGgaGCGGCCAgGcCCCCCg -3'
miRNA:   3'- -CGGgaa-GUUgaCGCUGGUgUaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.