miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 60954 0.69 0.893297
Target:  5'- cGCUCaucCAGCUGUG-CCGCAUCCugaugCCCg -3'
miRNA:   3'- -CGGGaa-GUUGACGCuGGUGUAGG-----GGG- -5'
14514 5' -55.1 NC_003521.1 + 62771 0.68 0.92802
Target:  5'- uGCCCUgagGGCgagGUGuGCUACAcCCCCCa -3'
miRNA:   3'- -CGGGAag-UUGa--CGC-UGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 63049 0.68 0.92802
Target:  5'- gGCCCcgUCGGCccugGCGAcgaCCGCGaCCCCg -3'
miRNA:   3'- -CGGGa-AGUUGa---CGCU---GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 63329 0.7 0.858442
Target:  5'- uGCCUggagagCGACUGCGAUCcCA-CCUCCa -3'
miRNA:   3'- -CGGGaa----GUUGACGCUGGuGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 66697 0.66 0.968168
Target:  5'- cUCCUg-GGCUGCGACCcccugagggucuGC-UCCCCUa -3'
miRNA:   3'- cGGGAagUUGACGCUGG------------UGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 66734 0.68 0.92491
Target:  5'- uGCCCggccaucgugccgCGACUG-GACgACAUCCCgCg -3'
miRNA:   3'- -CGGGaa-----------GUUGACgCUGgUGUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 67838 0.68 0.946686
Target:  5'- aGCCCcgCGACccagaagGCGGCC-CGgugaaCCCCCu -3'
miRNA:   3'- -CGGGaaGUUGa------CGCUGGuGUa----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 68034 0.66 0.980662
Target:  5'- cGCCaCgggCGGC-GUGGuCCGCGgcgCCCCCg -3'
miRNA:   3'- -CGG-Gaa-GUUGaCGCU-GGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 70475 0.67 0.950798
Target:  5'- uCCCgaguacCAccGCUGCcGCCACGUCUUCCa -3'
miRNA:   3'- cGGGaa----GU--UGACGcUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 70813 0.66 0.971034
Target:  5'- gGCCCgaagaggcgCAGCaa-GGCCucauggaaaGCGUCCCCCg -3'
miRNA:   3'- -CGGGaa-------GUUGacgCUGG---------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 72387 0.66 0.971034
Target:  5'- cGCUCUUCAcgcccgccGCcGCGGCCcuGCcgCCCgCCc -3'
miRNA:   3'- -CGGGAAGU--------UGaCGCUGG--UGuaGGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 73393 0.68 0.941909
Target:  5'- uGUCCgaguUCAuccaccuGCUGCGccGCCACuUCCCCg -3'
miRNA:   3'- -CGGGa---AGU-------UGACGC--UGGUGuAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 74169 0.69 0.899638
Target:  5'- uGCCgCUggcCGACUGCG-CCGCggCgCCCg -3'
miRNA:   3'- -CGG-GAa--GUUGACGCuGGUGuaGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 74848 0.68 0.942355
Target:  5'- cGCCC-UCAcGCUGCacGACCugcacgACAUCUUCCg -3'
miRNA:   3'- -CGGGaAGU-UGACG--CUGG------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 76051 0.72 0.78415
Target:  5'- uGCCCgccgcgUCAcuaugguucGCccgGCGACCGCGaugCCCCCc -3'
miRNA:   3'- -CGGGa-----AGU---------UGa--CGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 76372 0.66 0.980662
Target:  5'- cGCCCUUCA--UGCucaGGcCCGCGgcgCCCuCCa -3'
miRNA:   3'- -CGGGAAGUugACG---CU-GGUGUa--GGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 76864 0.68 0.933023
Target:  5'- cGCCauCUUCGGCguccGCGGCCGagacUCCUCCu -3'
miRNA:   3'- -CGG--GAAGUUGa---CGCUGGUgu--AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 79239 0.68 0.922792
Target:  5'- uGCCCgcggUAGCgcgGCGA-CACGUUCUCCg -3'
miRNA:   3'- -CGGGaa--GUUGa--CGCUgGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 80126 0.66 0.976204
Target:  5'- cGCCCUUguGuuuUUGCGGCCggugcugcGCGUCCagCCg -3'
miRNA:   3'- -CGGGAAguU---GACGCUGG--------UGUAGGg-GG- -5'
14514 5' -55.1 NC_003521.1 + 80483 0.66 0.968168
Target:  5'- cGCCC-UCGACgacggagGCcACCGCG-CCgCCCa -3'
miRNA:   3'- -CGGGaAGUUGa------CGcUGGUGUaGG-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.