miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 85551 0.7 0.865819
Target:  5'- uGCCCagCGACgggccugagGCGccgccGCCGCcgCCCCCc -3'
miRNA:   3'- -CGGGaaGUUGa--------CGC-----UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 99622 0.7 0.865819
Target:  5'- cGCCCggCGGCgcaGCG-CCACggCCaCCCg -3'
miRNA:   3'- -CGGGaaGUUGa--CGCuGGUGuaGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 141923 0.7 0.865819
Target:  5'- cGCCCaugUUCuccGCcGCGACgACGgcgCCCCCu -3'
miRNA:   3'- -CGGG---AAGu--UGaCGCUGgUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 235200 0.7 0.865819
Target:  5'- cGCCCUguggugCGACUGCGACgaguggcaguCGCA-CCUCUa -3'
miRNA:   3'- -CGGGAa-----GUUGACGCUG----------GUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138990 0.7 0.868715
Target:  5'- cGCUCUUCAucgugcccgaggccuACcGCGACCGC--CCCCUg -3'
miRNA:   3'- -CGGGAAGU---------------UGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 137154 0.7 0.872998
Target:  5'- cGCCCgcCAugGCcGCGGCCGCAgcggCCgCCg -3'
miRNA:   3'- -CGGGaaGU--UGaCGCUGGUGUa---GGgGG- -5'
14514 5' -55.1 NC_003521.1 + 182395 0.7 0.879974
Target:  5'- cGCCCggCAgcGCUGCGGCUuCGUCaaCCg -3'
miRNA:   3'- -CGGGaaGU--UGACGCUGGuGUAGggGG- -5'
14514 5' -55.1 NC_003521.1 + 157493 0.7 0.879974
Target:  5'- cCCCUguUCAcccACUGCaccGACCGCuaCCCCCu -3'
miRNA:   3'- cGGGA--AGU---UGACG---CUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 117622 0.7 0.879974
Target:  5'- cGUCCUaccCGGCgccguaUGCGGCCuACgGUCCCCCg -3'
miRNA:   3'- -CGGGAa--GUUG------ACGCUGG-UG-UAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 50252 0.7 0.879974
Target:  5'- cGCCCUcgaUCAcgccguacugccGCUGCaGCCGgGUCCgCCg -3'
miRNA:   3'- -CGGGA---AGU------------UGACGcUGGUgUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 18199 0.7 0.886742
Target:  5'- gGCCCUUCGAUcacaUGuCGGCCGCggaGUUCCgCg -3'
miRNA:   3'- -CGGGAAGUUG----AC-GCUGGUG---UAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 118996 0.69 0.893297
Target:  5'- uGCCCgacaUCAACgUGC-ACCACua-CCCCa -3'
miRNA:   3'- -CGGGa---AGUUG-ACGcUGGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 60954 0.69 0.893297
Target:  5'- cGCUCaucCAGCUGUG-CCGCAUCCugaugCCCg -3'
miRNA:   3'- -CGGGaa-GUUGACGCuGGUGUAGG-----GGG- -5'
14514 5' -55.1 NC_003521.1 + 180950 0.69 0.899638
Target:  5'- cUCCUggAACUcgGCGGCCACAUCgCCg -3'
miRNA:   3'- cGGGAagUUGA--CGCUGGUGUAGgGGg -5'
14514 5' -55.1 NC_003521.1 + 74169 0.69 0.899638
Target:  5'- uGCCgCUggcCGACUGCG-CCGCggCgCCCg -3'
miRNA:   3'- -CGG-GAa--GUUGACGCuGGUGuaGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 143846 0.69 0.90576
Target:  5'- cGCCCU----CUGCGACUACAgCCUCa -3'
miRNA:   3'- -CGGGAaguuGACGCUGGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 18757 0.69 0.90576
Target:  5'- gGCgCCgacgggUCGcuGCUGCGACgGCuggugCCCCCc -3'
miRNA:   3'- -CG-GGa-----AGU--UGACGCUGgUGua---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 47647 0.69 0.91166
Target:  5'- gGCUCUggcggCAGCUGCGcaacaGCagcaGCAgacgCCCCCg -3'
miRNA:   3'- -CGGGAa----GUUGACGC-----UGg---UGUa---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 110598 0.69 0.917338
Target:  5'- gGUCCUUgGGCgaggGCGGCUGCAUCUguaCCg -3'
miRNA:   3'- -CGGGAAgUUGa---CGCUGGUGUAGGg--GG- -5'
14514 5' -55.1 NC_003521.1 + 31724 0.69 0.917338
Target:  5'- cGUgCUggGACgccGCGGCCACcgCCUCCg -3'
miRNA:   3'- -CGgGAagUUGa--CGCUGGUGuaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.