miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 53881 0.72 0.77515
Target:  5'- aGCUgcUCGAgUGCGuucGCCGCcgCCCCCg -3'
miRNA:   3'- -CGGgaAGUUgACGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 76051 0.72 0.78415
Target:  5'- uGCCCgccgcgUCAcuaugguucGCccgGCGACCGCGaugCCCCCc -3'
miRNA:   3'- -CGGGa-----AGU---------UGa--CGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 160384 0.72 0.78415
Target:  5'- gGCUCUcugCGGCUcGCGuuCGCGUUCCCCg -3'
miRNA:   3'- -CGGGAa--GUUGA-CGCugGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 167415 0.72 0.78415
Target:  5'- gGCgCUUCGGCUGCuGuccuCCcCAUCCUCCg -3'
miRNA:   3'- -CGgGAAGUUGACG-Cu---GGuGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204406 0.72 0.78415
Target:  5'- gGCCCUcCGACcGCGAaauCCACG-CCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGCU---GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 167829 0.72 0.793023
Target:  5'- aGCCagagCAGgaGCGGCCAgGcCCCCCg -3'
miRNA:   3'- -CGGgaa-GUUgaCGCUGGUgUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138865 0.72 0.793023
Target:  5'- uGCaCCUUCuGCguggaucacgGCGGCCACGUggaCCCCa -3'
miRNA:   3'- -CG-GGAAGuUGa---------CGCUGGUGUAg--GGGG- -5'
14514 5' -55.1 NC_003521.1 + 130341 0.72 0.801758
Target:  5'- uGCUCUUCA---GCGcCCugAUCCCCUg -3'
miRNA:   3'- -CGGGAAGUugaCGCuGGugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 163577 0.72 0.801758
Target:  5'- cCCCUUCcccccGugUGUGcCCuguCGUCCCCCg -3'
miRNA:   3'- cGGGAAG-----UugACGCuGGu--GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 118912 0.71 0.808643
Target:  5'- cGCCCUcgUCGGCgccgcggcguggGCGGCgGCGUCCCg- -3'
miRNA:   3'- -CGGGA--AGUUGa-----------CGCUGgUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 175521 0.71 0.818787
Target:  5'- gGUuuUUCGgaGCUGCGACaGCG-CCCCCa -3'
miRNA:   3'- -CGggAAGU--UGACGCUGgUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 197017 0.71 0.827066
Target:  5'- aCCCggCuGCUGCGACaugGCggCCCCCc -3'
miRNA:   3'- cGGGaaGuUGACGCUGg--UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 27675 0.71 0.827066
Target:  5'- uGCCCUggaccaacgucuUCAguucGCUGCGGCCGCA-CCaCgCCa -3'
miRNA:   3'- -CGGGA------------AGU----UGACGCUGGUGUaGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 119666 0.71 0.827066
Target:  5'- cGCCCUcuucuucuUCGACcGCGACaugcucaugcugCGCggCCCCCa -3'
miRNA:   3'- -CGGGA--------AGUUGaCGCUG------------GUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 156568 0.71 0.843115
Target:  5'- uGCCCagCGACcGCcAUCGCAUCCaCCCc -3'
miRNA:   3'- -CGGGaaGUUGaCGcUGGUGUAGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 80995 0.71 0.843115
Target:  5'- gGCCCUUCucCUugGUGugCAUGUCCCgCa -3'
miRNA:   3'- -CGGGAAGuuGA--CGCugGUGUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 144847 0.7 0.848564
Target:  5'- uGCCCUUCAcggucCUGCGccugucguacgccuACCGCAUCUUCg -3'
miRNA:   3'- -CGGGAAGUu----GACGC--------------UGGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 109049 0.7 0.850104
Target:  5'- aCCCUgcugCGcucGCUGCGgaucaccGCCugGUCCUCCa -3'
miRNA:   3'- cGGGAa---GU---UGACGC-------UGGugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 63329 0.7 0.858442
Target:  5'- uGCCUggagagCGACUGCGAUCcCA-CCUCCa -3'
miRNA:   3'- -CGGGaa----GUUGACGCUGGuGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 22365 0.7 0.858442
Target:  5'- cGCCCa-CGGCguggUGcCGGCCAUGUCCUCCg -3'
miRNA:   3'- -CGGGaaGUUG----AC-GCUGGUGUAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.