miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 27675 0.71 0.827066
Target:  5'- uGCCCUggaccaacgucuUCAguucGCUGCGGCCGCA-CCaCgCCa -3'
miRNA:   3'- -CGGGA------------AGU----UGACGCUGGUGUaGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 27952 0.66 0.968168
Target:  5'- cGCCCgcgUCcACgacGaCGACCAUAccgcugCCCCCc -3'
miRNA:   3'- -CGGGa--AGuUGa--C-GCUGGUGUa-----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 28145 0.73 0.718907
Target:  5'- uGCCCUggCGACggcgGCGACCAUG-CCCgCg -3'
miRNA:   3'- -CGGGAa-GUUGa---CGCUGGUGUaGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 28520 0.66 0.971034
Target:  5'- cGCCCUUCAGgUccugaugauccGCGACaCGCugaugAUCCUCUa -3'
miRNA:   3'- -CGGGAAGUUgA-----------CGCUG-GUG-----UAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 30308 0.67 0.961842
Target:  5'- aGCUCUUCAGCa--GACCGCG-CUCCa -3'
miRNA:   3'- -CGGGAAGUUGacgCUGGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 31724 0.69 0.917338
Target:  5'- cGUgCUggGACgccGCGGCCACcgCCUCCg -3'
miRNA:   3'- -CGgGAagUUGa--CGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 33133 0.66 0.973711
Target:  5'- cGCCUUUCcGCguaggGCucGCCGuCAUCUCCCu -3'
miRNA:   3'- -CGGGAAGuUGa----CGc-UGGU-GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 42289 0.67 0.954692
Target:  5'- gGCCCUcgcaGACgGUa--CGCAUCCCCCu -3'
miRNA:   3'- -CGGGAag--UUGaCGcugGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 42494 0.66 0.973711
Target:  5'- gGCCCgUCAcagguuuaGCcGCC-CAUCCCCCa -3'
miRNA:   3'- -CGGGaAGUuga-----CGcUGGuGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 42798 0.68 0.922792
Target:  5'- aCUCacgcUCGGCaGCGGCCACggUCCCCg -3'
miRNA:   3'- cGGGa---AGUUGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 47647 0.69 0.91166
Target:  5'- gGCUCUggcggCAGCUGCGcaacaGCagcaGCAgacgCCCCCg -3'
miRNA:   3'- -CGGGAa----GUUGACGC-----UGg---UGUa---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 48438 0.8 0.381204
Target:  5'- aGCaCCgUCAGCUGCuGAagUCGCGUCCCCCa -3'
miRNA:   3'- -CG-GGaAGUUGACG-CU--GGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 50252 0.7 0.879974
Target:  5'- cGCCCUcgaUCAcgccguacugccGCUGCaGCCGgGUCCgCCg -3'
miRNA:   3'- -CGGGA---AGU------------UGACGcUGGUgUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 52155 0.68 0.946686
Target:  5'- cGCCCgUCAGCgacgGU-ACCGCGggUCCgCCCg -3'
miRNA:   3'- -CGGGaAGUUGa---CGcUGGUGU--AGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 53226 0.67 0.965105
Target:  5'- aGUCCgcgGGCgaaGCGACCGCcggcgaagCCCCCg -3'
miRNA:   3'- -CGGGaagUUGa--CGCUGGUGua------GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 53446 0.67 0.958372
Target:  5'- cGUUCacCAGCUcgGCGGCCaggGCGUCCUCCa -3'
miRNA:   3'- -CGGGaaGUUGA--CGCUGG---UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 53881 0.72 0.77515
Target:  5'- aGCUgcUCGAgUGCGuucGCCGCcgCCCCCg -3'
miRNA:   3'- -CGGgaAGUUgACGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 59620 0.66 0.976204
Target:  5'- gGCCC--CGGCgGCGACCGCggCUCgCa -3'
miRNA:   3'- -CGGGaaGUUGaCGCUGGUGuaGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 60547 0.67 0.965105
Target:  5'- uGCUgcUCAACgUGCGcGCCuACuUCCCCCu -3'
miRNA:   3'- -CGGgaAGUUG-ACGC-UGG-UGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 60676 0.73 0.718907
Target:  5'- uGCUCUUCGuGCUGCGGCCGCGcgggggaCCCg -3'
miRNA:   3'- -CGGGAAGU-UGACGCUGGUGUagg----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.