miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 201718 0.67 0.950798
Target:  5'- cGCCCggaCGACUGCG-CCAa---CCCUg -3'
miRNA:   3'- -CGGGaa-GUUGACGCuGGUguagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 201422 0.66 0.980662
Target:  5'- cGCCCa--AACU-CGGCUccaACAUCgCCCCg -3'
miRNA:   3'- -CGGGaagUUGAcGCUGG---UGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 197183 0.76 0.541807
Target:  5'- uGCUCUcCGGCgGCGGCCGCcgCCUCCu -3'
miRNA:   3'- -CGGGAaGUUGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 197017 0.71 0.827066
Target:  5'- aCCCggCuGCUGCGACaugGCggCCCCCc -3'
miRNA:   3'- cGGGaaGuUGACGCUGg--UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 196439 0.68 0.942355
Target:  5'- cGCCCgggUCGGCcgGCuGCCGCGcgaaCCUCCg -3'
miRNA:   3'- -CGGGa--AGUUGa-CGcUGGUGUa---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 194001 0.67 0.963824
Target:  5'- cUCCUUCAGCgucgucaccggcgGCGGCguCAUCCagaCCa -3'
miRNA:   3'- cGGGAAGUUGa------------CGCUGguGUAGGg--GG- -5'
14514 5' -55.1 NC_003521.1 + 191877 0.68 0.941909
Target:  5'- uGUCCgucCAACUGgGcggcggcGCCACGUCCUUCa -3'
miRNA:   3'- -CGGGaa-GUUGACgC-------UGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 189479 0.66 0.980662
Target:  5'- uUCCUgugCAGUUGaGGCCGCAUCUCCUu -3'
miRNA:   3'- cGGGAa--GUUGACgCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187690 0.73 0.718907
Target:  5'- cGCCCUcgggCGACUGCGuguACCugAUCUCgCg -3'
miRNA:   3'- -CGGGAa---GUUGACGC---UGGugUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 187493 0.76 0.555383
Target:  5'- gGCCCUUCAacugguacuucaccuACUGCGACCuGC-UCCgCCu -3'
miRNA:   3'- -CGGGAAGU---------------UGACGCUGG-UGuAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 187407 0.66 0.978518
Target:  5'- cGCaCCUUgcCGAcCUGcCGACgCGcCAUCCCCUg -3'
miRNA:   3'- -CG-GGAA--GUU-GAC-GCUG-GU-GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 184837 0.66 0.976204
Target:  5'- uCCCgcuacUCGcgccGCUGCGACUGCcgaCCCCa -3'
miRNA:   3'- cGGGa----AGU----UGACGCUGGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 184111 0.67 0.965105
Target:  5'- gGCUCgacgUCGAC-GCGACCAgcguCAUCCgCUg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUGGU----GUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 183119 0.69 0.917338
Target:  5'- uGCUCUcaccCggUUGCGGCgguCGCAUCCCCg -3'
miRNA:   3'- -CGGGAa---GuuGACGCUG---GUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 182423 0.69 0.917338
Target:  5'- cGCCgCaUC-AC-GCGGCCGCGgcagaUCCCCCu -3'
miRNA:   3'- -CGG-GaAGuUGaCGCUGGUGU-----AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 182395 0.7 0.879974
Target:  5'- cGCCCggCAgcGCUGCGGCUuCGUCaaCCg -3'
miRNA:   3'- -CGGGaaGU--UGACGCUGGuGUAGggGG- -5'
14514 5' -55.1 NC_003521.1 + 180950 0.69 0.899638
Target:  5'- cUCCUggAACUcgGCGGCCACAUCgCCg -3'
miRNA:   3'- cGGGAagUUGA--CGCUGGUGUAGgGGg -5'
14514 5' -55.1 NC_003521.1 + 180590 0.66 0.980662
Target:  5'- cGCCg-UCAGCcucgaGACCGCAgcuUCCCCUu -3'
miRNA:   3'- -CGGgaAGUUGacg--CUGGUGU---AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 180098 0.66 0.978295
Target:  5'- cGUCCagggagggCAGCggcguggUGCGACCcgcGCcgCCCCCg -3'
miRNA:   3'- -CGGGaa------GUUG-------ACGCUGG---UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 178604 0.66 0.978518
Target:  5'- cGCCCUccugCAGCacgGCGuCCAacgCCUCCu -3'
miRNA:   3'- -CGGGAa---GUUGa--CGCuGGUguaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.