miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 239867 0.69 0.917338
Target:  5'- aGCCCaUUCcuCUGCagcgGACCACGUUCCa- -3'
miRNA:   3'- -CGGG-AAGuuGACG----CUGGUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 237388 0.67 0.965105
Target:  5'- uGCCCUcggcgUCGGCaugGCGggggucugagugGCCcCAUCCCCg -3'
miRNA:   3'- -CGGGA-----AGUUGa--CGC------------UGGuGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 236635 0.66 0.980662
Target:  5'- uCCUUUCAcCUgGCucCCAUGUCCCCUu -3'
miRNA:   3'- cGGGAAGUuGA-CGcuGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 235200 0.7 0.865819
Target:  5'- cGCCCUguggugCGACUGCGACgaguggcaguCGCA-CCUCUa -3'
miRNA:   3'- -CGGGAa-----GUUGACGCUG----------GUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 234436 0.66 0.975962
Target:  5'- cGCCgCggUAGCUGCGGcgccccuCCGCGaCCCCg -3'
miRNA:   3'- -CGG-GaaGUUGACGCU-------GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 232467 0.66 0.978518
Target:  5'- uUUCUUCucugGCUGCGAgCGCua-CCCCa -3'
miRNA:   3'- cGGGAAGu---UGACGCUgGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 228821 0.68 0.92802
Target:  5'- uCCCUUCGAagcaUGCGguaCACAgauacagcucccUCCCCCc -3'
miRNA:   3'- cGGGAAGUUg---ACGCug-GUGU------------AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 226706 0.74 0.660138
Target:  5'- aGCCCUUCGGCg--GACCcagacacaggcaGCGUCCCUCg -3'
miRNA:   3'- -CGGGAAGUUGacgCUGG------------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 224290 0.68 0.946263
Target:  5'- aGCCCguggagcUUCAAauaugGUGGCCAgAcgCCCCCg -3'
miRNA:   3'- -CGGG-------AAGUUga---CGCUGGUgUa-GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 223848 0.68 0.92802
Target:  5'- uCCCUgCGGCUGCuGCUGCggcuGUCCCUCg -3'
miRNA:   3'- cGGGAaGUUGACGcUGGUG----UAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 223367 0.68 0.946686
Target:  5'- gGCCUUggUCAGCaGCGACauCGCGgcgCCCCg -3'
miRNA:   3'- -CGGGA--AGUUGaCGCUG--GUGUa--GGGGg -5'
14514 5' -55.1 NC_003521.1 + 223160 0.66 0.968168
Target:  5'- cGCCCg-CAGuCUGgaGGCCGCAUCgCUCa -3'
miRNA:   3'- -CGGGaaGUU-GACg-CUGGUGUAGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 222260 0.66 0.978295
Target:  5'- cGCUCUcCAGCUGCGcgcgcgugaugguGCC-CAgagCCCCg -3'
miRNA:   3'- -CGGGAaGUUGACGC-------------UGGuGUa--GGGGg -5'
14514 5' -55.1 NC_003521.1 + 221923 0.66 0.980662
Target:  5'- aCCCUUCGggGCUGCcgcggcGCCuCGUCCUCg -3'
miRNA:   3'- cGGGAAGU--UGACGc-----UGGuGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 206342 0.66 0.971034
Target:  5'- uGCUCUgcuuccgCGAgcugcuggcCUGCGGCgACGaCCCCCa -3'
miRNA:   3'- -CGGGAa------GUU---------GACGCUGgUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204406 0.72 0.78415
Target:  5'- gGCCCUcCGACcGCGAaauCCACG-CCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGCU---GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 204148 0.73 0.718907
Target:  5'- aGCCCggccUCAGCU-CGGCCGagaCCCCCa -3'
miRNA:   3'- -CGGGa---AGUUGAcGCUGGUguaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 202749 0.68 0.942355
Target:  5'- uGCCag-CGACgGCcACCACAaCCCCUg -3'
miRNA:   3'- -CGGgaaGUUGaCGcUGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 202626 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5'
14514 5' -55.1 NC_003521.1 + 202563 0.67 0.954692
Target:  5'- cUCCUggGGCUGCugacccugGGCCGCGUCucgCCCCg -3'
miRNA:   3'- cGGGAagUUGACG--------CUGGUGUAG---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.