miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 80995 0.71 0.843115
Target:  5'- gGCCCUUCucCUugGUGugCAUGUCCCgCa -3'
miRNA:   3'- -CGGGAAGuuGA--CGCugGUGUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 53881 0.72 0.77515
Target:  5'- aGCUgcUCGAgUGCGuucGCCGCcgCCCCCg -3'
miRNA:   3'- -CGGgaAGUUgACGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 160384 0.72 0.78415
Target:  5'- gGCUCUcugCGGCUcGCGuuCGCGUUCCCCg -3'
miRNA:   3'- -CGGGAa--GUUGA-CGCugGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 167415 0.72 0.78415
Target:  5'- gGCgCUUCGGCUGCuGuccuCCcCAUCCUCCg -3'
miRNA:   3'- -CGgGAAGUUGACG-Cu---GGuGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204406 0.72 0.78415
Target:  5'- gGCCCUcCGACcGCGAaauCCACG-CCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGCU---GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 167829 0.72 0.793023
Target:  5'- aGCCagagCAGgaGCGGCCAgGcCCCCCg -3'
miRNA:   3'- -CGGgaa-GUUgaCGCUGGUgUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138865 0.72 0.793023
Target:  5'- uGCaCCUUCuGCguggaucacgGCGGCCACGUggaCCCCa -3'
miRNA:   3'- -CG-GGAAGuUGa---------CGCUGGUGUAg--GGGG- -5'
14514 5' -55.1 NC_003521.1 + 163577 0.72 0.801758
Target:  5'- cCCCUUCcccccGugUGUGcCCuguCGUCCCCCg -3'
miRNA:   3'- cGGGAAG-----UugACGCuGGu--GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 118912 0.71 0.808643
Target:  5'- cGCCCUcgUCGGCgccgcggcguggGCGGCgGCGUCCCg- -3'
miRNA:   3'- -CGGGA--AGUUGa-----------CGCUGgUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 174044 0.72 0.766028
Target:  5'- gGCCCgcacgUgGGCUGCGAUCGCcucGUCCUCa -3'
miRNA:   3'- -CGGGa----AgUUGACGCUGGUG---UAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 129728 0.73 0.738024
Target:  5'- gGCCCgUCGAC-GCGAgCGCGUCCgCgCCg -3'
miRNA:   3'- -CGGGaAGUUGaCGCUgGUGUAGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 108530 0.73 0.738024
Target:  5'- --gCUUCGACgGCGACCugGUCaCCCg -3'
miRNA:   3'- cggGAAGUUGaCGCUGGugUAGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 126069 0.81 0.335137
Target:  5'- uGUCCagCAGCUGUGGCCGCGccaCCCCCa -3'
miRNA:   3'- -CGGGaaGUUGACGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 84684 0.78 0.448847
Target:  5'- cGCCag-CAGCUGCGugCACA-CCUCCa -3'
miRNA:   3'- -CGGgaaGUUGACGCugGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 89784 0.78 0.457763
Target:  5'- gGCgCUUUCAAC-GCGACCACGcggUUCCCCg -3'
miRNA:   3'- -CG-GGAAGUUGaCGCUGGUGU---AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 174693 0.76 0.5907
Target:  5'- gGUCCUUCAgacACUGCaGCCACAggUCCCUa -3'
miRNA:   3'- -CGGGAAGU---UGACGcUGGUGU--AGGGGg -5'
14514 5' -55.1 NC_003521.1 + 226706 0.74 0.660138
Target:  5'- aGCCCUUCGGCg--GACCcagacacaggcaGCGUCCCUCg -3'
miRNA:   3'- -CGGGAAGUUGacgCUGG------------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204148 0.73 0.718907
Target:  5'- aGCCCggccUCAGCU-CGGCCGagaCCCCCa -3'
miRNA:   3'- -CGGGa---AGUUGAcGCUGGUguaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 60676 0.73 0.718907
Target:  5'- uGCUCUUCGuGCUGCGGCCGCGcgggggaCCCg -3'
miRNA:   3'- -CGGGAAGU-UGACGCUGGUGUagg----GGG- -5'
14514 5' -55.1 NC_003521.1 + 28145 0.73 0.718907
Target:  5'- uGCCCUggCGACggcgGCGACCAUG-CCCgCg -3'
miRNA:   3'- -CGGGAa-GUUGa---CGCUGGUGUaGGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.