miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 48438 0.8 0.381204
Target:  5'- aGCaCCgUCAGCUGCuGAagUCGCGUCCCCCa -3'
miRNA:   3'- -CG-GGaAGUUGACG-CU--GGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138990 0.7 0.868715
Target:  5'- cGCUCUUCAucgugcccgaggccuACcGCGACCGC--CCCCUg -3'
miRNA:   3'- -CGGGAAGU---------------UGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 182395 0.7 0.879974
Target:  5'- cGCCCggCAgcGCUGCGGCUuCGUCaaCCg -3'
miRNA:   3'- -CGGGaaGU--UGACGCUGGuGUAGggGG- -5'
14514 5' -55.1 NC_003521.1 + 201422 0.66 0.980662
Target:  5'- cGCCCa--AACU-CGGCUccaACAUCgCCCCg -3'
miRNA:   3'- -CGGGaagUUGAcGCUGG---UGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 170716 0.74 0.650222
Target:  5'- gGCCCUUCGGCggcacGcCGGCCAgGUgCCCUg -3'
miRNA:   3'- -CGGGAAGUUGa----C-GCUGGUgUAgGGGG- -5'
14514 5' -55.1 NC_003521.1 + 14449 0.74 0.660138
Target:  5'- gGCCCUgCGGCgGCGucaGCCGCcgCUCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 93237 0.72 0.77515
Target:  5'- gGCaCCUUCuucggacuCUGCGGCCuCAUCuaCCCCa -3'
miRNA:   3'- -CG-GGAAGuu------GACGCUGGuGUAG--GGGG- -5'
14514 5' -55.1 NC_003521.1 + 76051 0.72 0.78415
Target:  5'- uGCCCgccgcgUCAcuaugguucGCccgGCGACCGCGaugCCCCCc -3'
miRNA:   3'- -CGGGa-----AGU---------UGa--CGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 27675 0.71 0.827066
Target:  5'- uGCCCUggaccaacgucuUCAguucGCUGCGGCCGCA-CCaCgCCa -3'
miRNA:   3'- -CGGGA------------AGU----UGACGCUGGUGUaGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 141923 0.7 0.865819
Target:  5'- cGCCCaugUUCuccGCcGCGACgACGgcgCCCCCu -3'
miRNA:   3'- -CGGG---AAGu--UGaCGCUGgUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 119666 0.71 0.827066
Target:  5'- cGCCCUcuucuucuUCGACcGCGACaugcucaugcugCGCggCCCCCa -3'
miRNA:   3'- -CGGGA--------AGUUGaCGCUG------------GUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 175521 0.71 0.818787
Target:  5'- gGUuuUUCGgaGCUGCGACaGCG-CCCCCa -3'
miRNA:   3'- -CGggAAGU--UGACGCUGgUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 197183 0.76 0.541807
Target:  5'- uGCUCUcCGGCgGCGGCCGCcgCCUCCu -3'
miRNA:   3'- -CGGGAaGUUGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 109049 0.7 0.850104
Target:  5'- aCCCUgcugCGcucGCUGCGgaucaccGCCugGUCCUCCa -3'
miRNA:   3'- cGGGAa---GU---UGACGC-------UGGugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187493 0.76 0.555383
Target:  5'- gGCCCUUCAacugguacuucaccuACUGCGACCuGC-UCCgCCu -3'
miRNA:   3'- -CGGGAAGU---------------UGACGCUGG-UGuAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 130341 0.72 0.801758
Target:  5'- uGCUCUUCA---GCGcCCugAUCCCCUg -3'
miRNA:   3'- -CGGGAAGUugaCGCuGGugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 22365 0.7 0.858442
Target:  5'- cGCCCa-CGGCguggUGcCGGCCAUGUCCUCCg -3'
miRNA:   3'- -CGGGaaGUUG----AC-GCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 157493 0.7 0.879974
Target:  5'- cCCCUguUCAcccACUGCaccGACCGCuaCCCCCu -3'
miRNA:   3'- cGGGA--AGU---UGACG---CUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 93758 0.75 0.620424
Target:  5'- uCCCUUCAGaugaugaUGCGACUcCcUCCCCCg -3'
miRNA:   3'- cGGGAAGUUg------ACGCUGGuGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187690 0.73 0.718907
Target:  5'- cGCCCUcgggCGACUGCGuguACCugAUCUCgCg -3'
miRNA:   3'- -CGGGAa---GUUGACGC---UGGugUAGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.