miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 180950 0.69 0.899638
Target:  5'- cUCCUggAACUcgGCGGCCACAUCgCCg -3'
miRNA:   3'- cGGGAagUUGA--CGCUGGUGUAGgGGg -5'
14514 5' -55.1 NC_003521.1 + 182395 0.7 0.879974
Target:  5'- cGCCCggCAgcGCUGCGGCUuCGUCaaCCg -3'
miRNA:   3'- -CGGGaaGU--UGACGCUGGuGUAGggGG- -5'
14514 5' -55.1 NC_003521.1 + 175521 0.71 0.818787
Target:  5'- gGUuuUUCGgaGCUGCGACaGCG-CCCCCa -3'
miRNA:   3'- -CGggAAGU--UGACGCUGgUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 93758 0.75 0.620424
Target:  5'- uCCCUUCAGaugaugaUGCGACUcCcUCCCCCg -3'
miRNA:   3'- cGGGAAGUUg------ACGCUGGuGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 62771 0.68 0.92802
Target:  5'- uGCCCUgagGGCgagGUGuGCUACAcCCCCCa -3'
miRNA:   3'- -CGGGAag-UUGa--CGC-UGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 124348 0.69 0.917338
Target:  5'- cGCUCUUCAuc-GCcGCCACGUgUCCCa -3'
miRNA:   3'- -CGGGAAGUugaCGcUGGUGUAgGGGG- -5'
14514 5' -55.1 NC_003521.1 + 138990 0.7 0.868715
Target:  5'- cGCUCUUCAucgugcccgaggccuACcGCGACCGC--CCCCUg -3'
miRNA:   3'- -CGGGAAGU---------------UGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187493 0.76 0.555383
Target:  5'- gGCCCUUCAacugguacuucaccuACUGCGACCuGC-UCCgCCu -3'
miRNA:   3'- -CGGGAAGU---------------UGACGCUGG-UGuAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 25566 0.69 0.917338
Target:  5'- cGCCCUUcCAGCUguugGCGGCCucGCucuUCaCCCUg -3'
miRNA:   3'- -CGGGAA-GUUGA----CGCUGG--UGu--AG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 197183 0.76 0.541807
Target:  5'- uGCUCUcCGGCgGCGGCCGCcgCCUCCu -3'
miRNA:   3'- -CGGGAaGUUGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 157493 0.7 0.879974
Target:  5'- cCCCUguUCAcccACUGCaccGACCGCuaCCCCCu -3'
miRNA:   3'- cGGGA--AGU---UGACG---CUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 47647 0.69 0.91166
Target:  5'- gGCUCUggcggCAGCUGCGcaacaGCagcaGCAgacgCCCCCg -3'
miRNA:   3'- -CGGGAa----GUUGACGC-----UGg---UGUa---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 109049 0.7 0.850104
Target:  5'- aCCCUgcugCGcucGCUGCGgaucaccGCCugGUCCUCCa -3'
miRNA:   3'- cGGGAa---GU---UGACGC-------UGGugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 27675 0.71 0.827066
Target:  5'- uGCCCUggaccaacgucuUCAguucGCUGCGGCCGCA-CCaCgCCa -3'
miRNA:   3'- -CGGGA------------AGU----UGACGCUGGUGUaGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 93237 0.72 0.77515
Target:  5'- gGCaCCUUCuucggacuCUGCGGCCuCAUCuaCCCCa -3'
miRNA:   3'- -CG-GGAAGuu------GACGCUGGuGUAG--GGGG- -5'
14514 5' -55.1 NC_003521.1 + 170716 0.74 0.650222
Target:  5'- gGCCCUUCGGCggcacGcCGGCCAgGUgCCCUg -3'
miRNA:   3'- -CGGGAAGUUGa----C-GCUGGUgUAgGGGG- -5'
14514 5' -55.1 NC_003521.1 + 163060 0.68 0.933023
Target:  5'- cGCCU----GCcGCGACUACAUCCugCCCa -3'
miRNA:   3'- -CGGGaaguUGaCGCUGGUGUAGG--GGG- -5'
14514 5' -55.1 NC_003521.1 + 228821 0.68 0.92802
Target:  5'- uCCCUUCGAagcaUGCGguaCACAgauacagcucccUCCCCCc -3'
miRNA:   3'- cGGGAAGUUg---ACGCug-GUGU------------AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 110771 0.68 0.922792
Target:  5'- gGCCgCggaGACgugcGUGGCCACGUgCCCCu -3'
miRNA:   3'- -CGG-GaagUUGa---CGCUGGUGUAgGGGG- -5'
14514 5' -55.1 NC_003521.1 + 239867 0.69 0.917338
Target:  5'- aGCCCaUUCcuCUGCagcgGACCACGUUCCa- -3'
miRNA:   3'- -CGGG-AAGuuGACG----CUGGUGUAGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.