miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 155271 0.67 0.898758
Target:  5'- gCGGCGCCuca-GGCCCGU-CGCugGGc -3'
miRNA:   3'- -GUCGUGGuacaCUGGGCAcGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 123583 0.67 0.898758
Target:  5'- gCAGCGCCGcGUGAUgCGUGCccuugcgucGCAgGGg -3'
miRNA:   3'- -GUCGUGGUaCACUGgGCACG---------CGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 97336 0.67 0.898758
Target:  5'- uUAGCACCGUcucgcUGugCU-UGCGCGCGAu -3'
miRNA:   3'- -GUCGUGGUAc----ACugGGcACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 200478 0.67 0.89241
Target:  5'- gCAGCGCCGUGauccUGGCCaaacuGgcgGCGCGCa- -3'
miRNA:   3'- -GUCGUGGUAC----ACUGGg----Ca--CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 216350 0.67 0.89241
Target:  5'- uGGcCACCgaggGUGUGagGCCCGUGgucCGCGCGGa -3'
miRNA:   3'- gUC-GUGG----UACAC--UGGGCAC---GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 74183 0.67 0.89241
Target:  5'- -uGCGCCGcGgcGCCCG-GCGCGCGGc -3'
miRNA:   3'- guCGUGGUaCacUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 43341 0.68 0.885848
Target:  5'- -cGCGCCGUccGGCCCGccGCGCGUGAa -3'
miRNA:   3'- guCGUGGUAcaCUGGGCa-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 219675 0.68 0.885848
Target:  5'- aCAGC-CCcgGggGGCCCGcGCGgACGGa -3'
miRNA:   3'- -GUCGuGGuaCa-CUGGGCaCGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 220508 0.68 0.885848
Target:  5'- gCAGCAgCGUgGUGGCCUccugGUGCuGCAUGGc -3'
miRNA:   3'- -GUCGUgGUA-CACUGGG----CACG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 205361 0.68 0.885848
Target:  5'- -uGCGCCGUGcacGACCUGcGCgGCAUGAu -3'
miRNA:   3'- guCGUGGUACa--CUGGGCaCG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 129100 0.68 0.879077
Target:  5'- aGGCugUggGUGGCgugCCG-GCGCACGGa -3'
miRNA:   3'- gUCGugGuaCACUG---GGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 155619 0.68 0.864921
Target:  5'- gCGGCGCCggGUGACgCaGUGuCGUACGc -3'
miRNA:   3'- -GUCGUGGuaCACUGgG-CAC-GCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 46194 0.68 0.864921
Target:  5'- -uGCACgGUGcugGugUCGUGCGCGCuGAu -3'
miRNA:   3'- guCGUGgUACa--CugGGCACGCGUG-CU- -5'
14516 3' -56.9 NC_003521.1 + 99659 0.68 0.864921
Target:  5'- gAGCACaCGUaggccaUGGCCCG-GUGCACGGg -3'
miRNA:   3'- gUCGUG-GUAc-----ACUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 64968 0.68 0.857546
Target:  5'- aAGCugCcgGUGACCU---CGCACGAc -3'
miRNA:   3'- gUCGugGuaCACUGGGcacGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 55953 0.68 0.857546
Target:  5'- gAGCACCGUGUGcagccccaccACgCCGaUGUGCAgGGg -3'
miRNA:   3'- gUCGUGGUACAC----------UG-GGC-ACGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 194276 0.68 0.857546
Target:  5'- uCAGCACCcgGcgcgaGGCCCugGUGCGcCugGAg -3'
miRNA:   3'- -GUCGUGGuaCa----CUGGG--CACGC-GugCU- -5'
14516 3' -56.9 NC_003521.1 + 92225 0.68 0.84998
Target:  5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3'
miRNA:   3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5'
14516 3' -56.9 NC_003521.1 + 204142 0.68 0.84998
Target:  5'- cCAGCugCGUGUGcagaaAgCCGaUGUGCACGu -3'
miRNA:   3'- -GUCGugGUACAC-----UgGGC-ACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 115558 0.68 0.849214
Target:  5'- gAGCGCCGUGcugcgcggacguUGAucucgccCCCGUGCGCGuCGu -3'
miRNA:   3'- gUCGUGGUAC------------ACU-------GGGCACGCGU-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.