Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14516 | 3' | -56.9 | NC_003521.1 | + | 139380 | 0.66 | 0.927206 |
Target: 5'- gAGCGCCGUGcucuUGGCCCcgcgGUGguCGAu -3' miRNA: 3'- gUCGUGGUAC----ACUGGGca--CGCguGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 34141 | 0.66 | 0.921961 |
Target: 5'- gCAGgGCCA---GGCCCacGCGCACGAa -3' miRNA: 3'- -GUCgUGGUacaCUGGGcaCGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 50328 | 0.66 | 0.921961 |
Target: 5'- aGGCAgCggGUccucGGCCCGUuuGCGCugGAu -3' miRNA: 3'- gUCGUgGuaCA----CUGGGCA--CGCGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 73099 | 0.66 | 0.921961 |
Target: 5'- gCAGCGCCAcgcaauccaccGUGGCCacggagGUGCuGCACGGc -3' miRNA: 3'- -GUCGUGGUa----------CACUGGg-----CACG-CGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 214577 | 0.66 | 0.921961 |
Target: 5'- gCAGCGCUGgc-GuuCCGUGCGCgACGAg -3' miRNA: 3'- -GUCGUGGUacaCugGGCACGCG-UGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 54530 | 0.67 | 0.918707 |
Target: 5'- aCGGCGCCGcUGgGGCCCGgcggcuuuuugacguUGCGCuuGAc -3' miRNA: 3'- -GUCGUGGU-ACaCUGGGC---------------ACGCGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 61503 | 0.67 | 0.916493 |
Target: 5'- gGGCACCc---GAacgaCGUGCGCGCGAa -3' miRNA: 3'- gUCGUGGuacaCUgg--GCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 122047 | 0.67 | 0.916493 |
Target: 5'- gCAGCGagAUGcagGGCgaCGUGCGCACGGc -3' miRNA: 3'- -GUCGUggUACa--CUGg-GCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 105930 | 0.67 | 0.916493 |
Target: 5'- aCGGuCugCGUGUGGCCgGcGCGgAUGAu -3' miRNA: 3'- -GUC-GugGUACACUGGgCaCGCgUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 53365 | 0.67 | 0.916493 |
Target: 5'- gCAGCACCGUcccgcUGACgCG-GCGCACc- -3' miRNA: 3'- -GUCGUGGUAc----ACUGgGCaCGCGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 19171 | 0.67 | 0.916493 |
Target: 5'- aCGGCGCUG-GUGGCCgacGUGCACGAg -3' miRNA: 3'- -GUCGUGGUaCACUGGgcaCGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 87268 | 0.67 | 0.914243 |
Target: 5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3' miRNA: 3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 17495 | 0.67 | 0.91022 |
Target: 5'- gCGGCGCCGccgGUcacggcgguucccGGCCCGgcgGCGCGgGAu -3' miRNA: 3'- -GUCGUGGUa--CA-------------CUGGGCa--CGCGUgCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 74128 | 0.67 | 0.904889 |
Target: 5'- gGGCGCCGUGcagGACgaCGUGgCGCGCc- -3' miRNA: 3'- gUCGUGGUACa--CUGg-GCAC-GCGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 194794 | 0.67 | 0.904889 |
Target: 5'- -uGcCGCCAUGUGGCCCuucacgGUGCuGCugGc -3' miRNA: 3'- guC-GUGGUACACUGGG------CACG-CGugCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 33672 | 0.67 | 0.904889 |
Target: 5'- cCAGCgACCGgccGUGGCCCGcacguaacgcUGCaGCugGAc -3' miRNA: 3'- -GUCG-UGGUa--CACUGGGC----------ACG-CGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 226823 | 0.67 | 0.904889 |
Target: 5'- aCAGCGCCAUGggguccucGCCCGccgccGCGC-CGGg -3' miRNA: 3'- -GUCGUGGUACac------UGGGCa----CGCGuGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 86351 | 0.67 | 0.904889 |
Target: 5'- cCGGCGCCGgcggugccgGUGACCaacaGCGUGCGGa -3' miRNA: 3'- -GUCGUGGUa--------CACUGGgca-CGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 206097 | 0.67 | 0.904889 |
Target: 5'- uCGGUACCcgGUG-UUCGUggacGCGCACGGc -3' miRNA: 3'- -GUCGUGGuaCACuGGGCA----CGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 97336 | 0.67 | 0.898758 |
Target: 5'- uUAGCACCGUcucgcUGugCU-UGCGCGCGAu -3' miRNA: 3'- -GUCGUGGUAc----ACugGGcACGCGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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