miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 212639 0.66 0.932227
Target:  5'- gGGCgacuugGCCAUGcGACCCGaagaggGCGuCGCGGg -3'
miRNA:   3'- gUCG------UGGUACaCUGGGCa-----CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 27109 0.66 0.932227
Target:  5'- aCGGCGCgCA---GGCCgGUGCGgGCGAa -3'
miRNA:   3'- -GUCGUG-GUacaCUGGgCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 225130 0.66 0.932227
Target:  5'- aCAGCACCuggucgacGUGguugcgGACCCaGUcGCGCACc- -3'
miRNA:   3'- -GUCGUGG--------UACa-----CUGGG-CA-CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 223165 0.66 0.932227
Target:  5'- gGGcCACCGUgGUGcCCCGgugcugGCGUACGu -3'
miRNA:   3'- gUC-GUGGUA-CACuGGGCa-----CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 145842 0.66 0.932227
Target:  5'- aCGGCACUAuuaacgcgucucUG-GGCCCGgcgGCGgGCGGc -3'
miRNA:   3'- -GUCGUGGU------------ACaCUGGGCa--CGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 87268 0.67 0.914243
Target:  5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3'
miRNA:   3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 54530 0.67 0.918707
Target:  5'- aCGGCGCCGcUGgGGCCCGgcggcuuuuugacguUGCGCuuGAc -3'
miRNA:   3'- -GUCGUGGU-ACaCUGGGC---------------ACGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 17495 0.67 0.91022
Target:  5'- gCGGCGCCGccgGUcacggcgguucccGGCCCGgcgGCGCGgGAu -3'
miRNA:   3'- -GUCGUGGUa--CA-------------CUGGGCa--CGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 74128 0.67 0.904889
Target:  5'- gGGCGCCGUGcagGACgaCGUGgCGCGCc- -3'
miRNA:   3'- gUCGUGGUACa--CUGg-GCAC-GCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 194794 0.67 0.904889
Target:  5'- -uGcCGCCAUGUGGCCCuucacgGUGCuGCugGc -3'
miRNA:   3'- guC-GUGGUACACUGGG------CACG-CGugCu -5'
14516 3' -56.9 NC_003521.1 + 206097 0.67 0.904889
Target:  5'- uCGGUACCcgGUG-UUCGUggacGCGCACGGc -3'
miRNA:   3'- -GUCGUGGuaCACuGGGCA----CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 97336 0.67 0.898758
Target:  5'- uUAGCACCGUcucgcUGugCU-UGCGCGCGAu -3'
miRNA:   3'- -GUCGUGGUAc----ACugGGcACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 216350 0.67 0.89241
Target:  5'- uGGcCACCgaggGUGUGagGCCCGUGgucCGCGCGGa -3'
miRNA:   3'- gUC-GUGG----UACAC--UGGGCAC---GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 155271 0.67 0.898758
Target:  5'- gCGGCGCCuca-GGCCCGU-CGCugGGc -3'
miRNA:   3'- -GUCGUGGuacaCUGGGCAcGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 86351 0.67 0.904889
Target:  5'- cCGGCGCCGgcggugccgGUGACCaacaGCGUGCGGa -3'
miRNA:   3'- -GUCGUGGUa--------CACUGGgca-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 122047 0.67 0.916493
Target:  5'- gCAGCGagAUGcagGGCgaCGUGCGCACGGc -3'
miRNA:   3'- -GUCGUggUACa--CUGg-GCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 74183 0.67 0.89241
Target:  5'- -uGCGCCGcGgcGCCCG-GCGCGCGGc -3'
miRNA:   3'- guCGUGGUaCacUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123583 0.67 0.898758
Target:  5'- gCAGCGCCGcGUGAUgCGUGCccuugcgucGCAgGGg -3'
miRNA:   3'- -GUCGUGGUaCACUGgGCACG---------CGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 226823 0.67 0.904889
Target:  5'- aCAGCGCCAUGggguccucGCCCGccgccGCGC-CGGg -3'
miRNA:   3'- -GUCGUGGUACac------UGGGCa----CGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 33672 0.67 0.904889
Target:  5'- cCAGCgACCGgccGUGGCCCGcacguaacgcUGCaGCugGAc -3'
miRNA:   3'- -GUCG-UGGUa--CACUGGGC----------ACG-CGugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.