miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 129591 0.7 0.783365
Target:  5'- gGGCGCgAcuUGUGACCCGUGuCGCcCa- -3'
miRNA:   3'- gUCGUGgU--ACACUGGGCAC-GCGuGcu -5'
14516 3' -56.9 NC_003521.1 + 4812 0.7 0.783365
Target:  5'- -uGCAUCAUGUuugucggauGACCCGUGCGaaCGCGc -3'
miRNA:   3'- guCGUGGUACA---------CUGGGCACGC--GUGCu -5'
14516 3' -56.9 NC_003521.1 + 152189 0.7 0.790457
Target:  5'- -uGCGCCucgcugggcUGUGACCCGgacgaggucacgGCGCACGu -3'
miRNA:   3'- guCGUGGu--------ACACUGGGCa-----------CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 126357 0.7 0.792217
Target:  5'- aCAGCAgCAUGUccaccucgaacGugUCgGUGCGCACGGc -3'
miRNA:   3'- -GUCGUgGUACA-----------CugGG-CACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 56935 0.7 0.792217
Target:  5'- cCAGCACCuc--GGCCuCGUGCcGCACGu -3'
miRNA:   3'- -GUCGUGGuacaCUGG-GCACG-CGUGCu -5'
14516 3' -56.9 NC_003521.1 + 212063 0.69 0.800935
Target:  5'- gCAGCGCUAgggcgGUGGCgCGgcccGCGCGCGu -3'
miRNA:   3'- -GUCGUGGUa----CACUGgGCa---CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 172088 0.69 0.80951
Target:  5'- gCGGCGgCGUGaUGAagUCCGUGCGgGCGGc -3'
miRNA:   3'- -GUCGUgGUAC-ACU--GGGCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 37415 0.69 0.80951
Target:  5'- gGGCcugACCGUGUGGCgCG-GCGC-CGAg -3'
miRNA:   3'- gUCG---UGGUACACUGgGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 78457 0.69 0.8262
Target:  5'- uCGGCGCgGcUGggaacgcGGCCCG-GCGCGCGAc -3'
miRNA:   3'- -GUCGUGgU-ACa------CUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 124911 0.69 0.8262
Target:  5'- aCAGCACg--G-GGCCCGUGUucaGCACGGu -3'
miRNA:   3'- -GUCGUGguaCaCUGGGCACG---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 119545 0.69 0.8262
Target:  5'- gCAGCACCAccucGGCgCCGUGCGUAUa- -3'
miRNA:   3'- -GUCGUGGUaca-CUG-GGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 31085 0.69 0.834301
Target:  5'- cCGGCugCc-GUGGCugCCGcUGCGCACGAc -3'
miRNA:   3'- -GUCGugGuaCACUG--GGC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123717 0.69 0.834301
Target:  5'- -cGCACgAUGUGAcauCCCG-GaCGCGCGGg -3'
miRNA:   3'- guCGUGgUACACU---GGGCaC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 204001 0.69 0.84223
Target:  5'- gCAGCGCCGgcccGUGGCgCGUGauCACGGc -3'
miRNA:   3'- -GUCGUGGUa---CACUGgGCACgcGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 166289 0.69 0.84223
Target:  5'- gCGGCugguCCGcGUGGCCuCGuUGCGUACGGc -3'
miRNA:   3'- -GUCGu---GGUaCACUGG-GC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 88260 0.69 0.84223
Target:  5'- gCGGCGCCAgcuUGACCgaGUGCuggcugucguGCACGAa -3'
miRNA:   3'- -GUCGUGGUac-ACUGGg-CACG----------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 115558 0.68 0.849214
Target:  5'- gAGCGCCGUGcugcgcggacguUGAucucgccCCCGUGCGCGuCGu -3'
miRNA:   3'- gUCGUGGUAC------------ACU-------GGGCACGCGU-GCu -5'
14516 3' -56.9 NC_003521.1 + 92225 0.68 0.84998
Target:  5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3'
miRNA:   3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5'
14516 3' -56.9 NC_003521.1 + 204142 0.68 0.84998
Target:  5'- cCAGCugCGUGUGcagaaAgCCGaUGUGCACGu -3'
miRNA:   3'- -GUCGugGUACAC-----UgGGC-ACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 64968 0.68 0.857546
Target:  5'- aAGCugCcgGUGACCU---CGCACGAc -3'
miRNA:   3'- gUCGugGuaCACUGGGcacGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.