miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 147709 1.09 0.003987
Target:  5'- cCAGCACCAUGUGACCCGUGCGCACGAa -3'
miRNA:   3'- -GUCGUGGUACACUGGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 203357 0.81 0.250492
Target:  5'- gCGGCACCAcgGUGGCCC--GCGCGCGAg -3'
miRNA:   3'- -GUCGUGGUa-CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 148935 0.75 0.513218
Target:  5'- gCAGCGCCGUGcUGGCgCGUGUgcuGCugGAg -3'
miRNA:   3'- -GUCGUGGUAC-ACUGgGCACG---CGugCU- -5'
14516 3' -56.9 NC_003521.1 + 103149 0.73 0.580706
Target:  5'- gCAGCACCAggcgGAUCuCGUcGCGCACGGc -3'
miRNA:   3'- -GUCGUGGUaca-CUGG-GCA-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 151058 0.73 0.590531
Target:  5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3'
miRNA:   3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 86811 0.73 0.620148
Target:  5'- -uGCACCAggugcUGcgGACCCGUGCGUGCu- -3'
miRNA:   3'- guCGUGGU-----ACa-CUGGGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 125859 0.73 0.620148
Target:  5'- aCAGCGCCuugGUGGCcgcguCCGUGuCGUACGGg -3'
miRNA:   3'- -GUCGUGGua-CACUG-----GGCAC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 73959 0.72 0.659722
Target:  5'- cCAGCACCGUGUG-CCUGcUGUGCGa-- -3'
miRNA:   3'- -GUCGUGGUACACuGGGC-ACGCGUgcu -5'
14516 3' -56.9 NC_003521.1 + 100968 0.72 0.679415
Target:  5'- aAGCGCCGU---GCCCGgcGCGCACGGc -3'
miRNA:   3'- gUCGUGGUAcacUGGGCa-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 23395 0.72 0.679415
Target:  5'- gAGCACCGUGUu-CCUGUGCuGCACc- -3'
miRNA:   3'- gUCGUGGUACAcuGGGCACG-CGUGcu -5'
14516 3' -56.9 NC_003521.1 + 43073 0.72 0.68921
Target:  5'- gAGCACCAggagaagaucGUGGCCUacGCGCGCGAc -3'
miRNA:   3'- gUCGUGGUa---------CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 148443 0.72 0.68921
Target:  5'- gCGGCuCCAgggGUGGCCgGUGCGUGCuGAu -3'
miRNA:   3'- -GUCGuGGUa--CACUGGgCACGCGUG-CU- -5'
14516 3' -56.9 NC_003521.1 + 74557 0.71 0.698961
Target:  5'- -cGCGCCGUGcGcguGCCCGUGaGCACGGc -3'
miRNA:   3'- guCGUGGUACaC---UGGGCACgCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 17667 0.71 0.718298
Target:  5'- gGGCACCAcgGUGGCCC-UGCGUAaccCGGc -3'
miRNA:   3'- gUCGUGGUa-CACUGGGcACGCGU---GCU- -5'
14516 3' -56.9 NC_003521.1 + 31821 0.71 0.718298
Target:  5'- gAGCGCCGUcucGGCCCGgGCGC-CGAa -3'
miRNA:   3'- gUCGUGGUAca-CUGGGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 208870 0.71 0.727867
Target:  5'- aCGGCACCAUGUG-CCUGUuccuggaccccGaggaGCGCGAg -3'
miRNA:   3'- -GUCGUGGUACACuGGGCA-----------Cg---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 153546 0.7 0.75515
Target:  5'- -cGCACCucg-GGCCCGUuggccacGCGCACGGc -3'
miRNA:   3'- guCGUGGuacaCUGGGCA-------CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 56129 0.7 0.756077
Target:  5'- cCAGCACCAcgucgggcgagUGcGGCUCGUgcugcucgcuGCGCGCGAa -3'
miRNA:   3'- -GUCGUGGU-----------ACaCUGGGCA----------CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 162727 0.7 0.765286
Target:  5'- gGGCugCGUgGUGGucgacauguacCCCGUGUGCAUGGc -3'
miRNA:   3'- gUCGugGUA-CACU-----------GGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 4812 0.7 0.783365
Target:  5'- -uGCAUCAUGUuugucggauGACCCGUGCGaaCGCGc -3'
miRNA:   3'- guCGUGGUACA---------CUGGGCACGC--GUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.