miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 99659 0.68 0.864921
Target:  5'- gAGCACaCGUaggccaUGGCCCG-GUGCACGGg -3'
miRNA:   3'- gUCGUG-GUAc-----ACUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 37415 0.69 0.80951
Target:  5'- gGGCcugACCGUGUGGCgCG-GCGC-CGAg -3'
miRNA:   3'- gUCG---UGGUACACUGgGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 119545 0.69 0.8262
Target:  5'- gCAGCACCAccucGGCgCCGUGCGUAUa- -3'
miRNA:   3'- -GUCGUGGUaca-CUG-GGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 124911 0.69 0.8262
Target:  5'- aCAGCACg--G-GGCCCGUGUucaGCACGGu -3'
miRNA:   3'- -GUCGUGguaCaCUGGGCACG---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123717 0.69 0.834301
Target:  5'- -cGCACgAUGUGAcauCCCG-GaCGCGCGGg -3'
miRNA:   3'- guCGUGgUACACU---GGGCaC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 88260 0.69 0.84223
Target:  5'- gCGGCGCCAgcuUGACCgaGUGCuggcugucguGCACGAa -3'
miRNA:   3'- -GUCGUGGUac-ACUGGg-CACG----------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 166289 0.69 0.84223
Target:  5'- gCGGCugguCCGcGUGGCCuCGuUGCGUACGGc -3'
miRNA:   3'- -GUCGu---GGUaCACUGG-GC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 55953 0.68 0.857546
Target:  5'- gAGCACCGUGUGcagccccaccACgCCGaUGUGCAgGGg -3'
miRNA:   3'- gUCGUGGUACAC----------UG-GGC-ACGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 64968 0.68 0.857546
Target:  5'- aAGCugCcgGUGACCU---CGCACGAc -3'
miRNA:   3'- gUCGugGuaCACUGGGcacGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 56935 0.7 0.792217
Target:  5'- cCAGCACCuc--GGCCuCGUGCcGCACGu -3'
miRNA:   3'- -GUCGUGGuacaCUGG-GCACG-CGUGCu -5'
14516 3' -56.9 NC_003521.1 + 126357 0.7 0.792217
Target:  5'- aCAGCAgCAUGUccaccucgaacGugUCgGUGCGCACGGc -3'
miRNA:   3'- -GUCGUgGUACA-----------CugGG-CACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 56129 0.7 0.756077
Target:  5'- cCAGCACCAcgucgggcgagUGcGGCUCGUgcugcucgcuGCGCGCGAa -3'
miRNA:   3'- -GUCGUGGU-----------ACaCUGGGCA----------CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 148935 0.75 0.513218
Target:  5'- gCAGCGCCGUGcUGGCgCGUGUgcuGCugGAg -3'
miRNA:   3'- -GUCGUGGUAC-ACUGgGCACG---CGugCU- -5'
14516 3' -56.9 NC_003521.1 + 125859 0.73 0.620148
Target:  5'- aCAGCGCCuugGUGGCcgcguCCGUGuCGUACGGg -3'
miRNA:   3'- -GUCGUGGua-CACUG-----GGCAC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 73959 0.72 0.659722
Target:  5'- cCAGCACCGUGUG-CCUGcUGUGCGa-- -3'
miRNA:   3'- -GUCGUGGUACACuGGGC-ACGCGUgcu -5'
14516 3' -56.9 NC_003521.1 + 100968 0.72 0.679415
Target:  5'- aAGCGCCGU---GCCCGgcGCGCACGGc -3'
miRNA:   3'- gUCGUGGUAcacUGGGCa-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 43073 0.72 0.68921
Target:  5'- gAGCACCAggagaagaucGUGGCCUacGCGCGCGAc -3'
miRNA:   3'- gUCGUGGUa---------CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 148443 0.72 0.68921
Target:  5'- gCGGCuCCAgggGUGGCCgGUGCGUGCuGAu -3'
miRNA:   3'- -GUCGuGGUa--CACUGGgCACGCGUG-CU- -5'
14516 3' -56.9 NC_003521.1 + 31821 0.71 0.718298
Target:  5'- gAGCGCCGUcucGGCCCGgGCGC-CGAa -3'
miRNA:   3'- gUCGUGGUAca-CUGGGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 153546 0.7 0.75515
Target:  5'- -cGCACCucg-GGCCCGUuggccacGCGCACGGc -3'
miRNA:   3'- guCGUGGuacaCUGGGCA-------CGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.