miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 203357 0.81 0.250492
Target:  5'- gCGGCACCAcgGUGGCCC--GCGCGCGAg -3'
miRNA:   3'- -GUCGUGGUa-CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 204001 0.69 0.84223
Target:  5'- gCAGCGCCGgcccGUGGCgCGUGauCACGGc -3'
miRNA:   3'- -GUCGUGGUa---CACUGgGCACgcGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 92225 0.68 0.84998
Target:  5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3'
miRNA:   3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5'
14516 3' -56.9 NC_003521.1 + 87984 0.66 0.945954
Target:  5'- gAGgACUcgGUGaAUCUGgggGCGCGCGAc -3'
miRNA:   3'- gUCgUGGuaCAC-UGGGCa--CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 23395 0.72 0.679415
Target:  5'- gAGCACCGUGUu-CCUGUGCuGCACc- -3'
miRNA:   3'- gUCGUGGUACAcuGGGCACG-CGUGcu -5'
14516 3' -56.9 NC_003521.1 + 74557 0.71 0.698961
Target:  5'- -cGCGCCGUGcGcguGCCCGUGaGCACGGc -3'
miRNA:   3'- guCGUGGUACaC---UGGGCACgCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 208870 0.71 0.727867
Target:  5'- aCGGCACCAUGUG-CCUGUuccuggaccccGaggaGCGCGAg -3'
miRNA:   3'- -GUCGUGGUACACuGGGCA-----------Cg---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 162727 0.7 0.765286
Target:  5'- gGGCugCGUgGUGGucgacauguacCCCGUGUGCAUGGc -3'
miRNA:   3'- gUCGugGUA-CACU-----------GGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 162409 0.7 0.783365
Target:  5'- uCGGUACC-UGUGAuCCCGUGgGCGaggcCGAc -3'
miRNA:   3'- -GUCGUGGuACACU-GGGCACgCGU----GCU- -5'
14516 3' -56.9 NC_003521.1 + 31085 0.69 0.834301
Target:  5'- cCGGCugCc-GUGGCugCCGcUGCGCACGAc -3'
miRNA:   3'- -GUCGugGuaCACUG--GGC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 212063 0.69 0.800935
Target:  5'- gCAGCGCUAgggcgGUGGCgCGgcccGCGCGCGu -3'
miRNA:   3'- -GUCGUGGUa----CACUGgGCa---CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 129591 0.7 0.783365
Target:  5'- gGGCGCgAcuUGUGACCCGUGuCGCcCa- -3'
miRNA:   3'- gUCGUGgU--ACACUGGGCAC-GCGuGcu -5'
14516 3' -56.9 NC_003521.1 + 103149 0.73 0.580706
Target:  5'- gCAGCACCAggcgGAUCuCGUcGCGCACGGc -3'
miRNA:   3'- -GUCGUGGUaca-CUGG-GCA-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 172088 0.69 0.80951
Target:  5'- gCGGCGgCGUGaUGAagUCCGUGCGgGCGGc -3'
miRNA:   3'- -GUCGUgGUAC-ACU--GGGCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 151058 0.73 0.590531
Target:  5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3'
miRNA:   3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 4812 0.7 0.783365
Target:  5'- -uGCAUCAUGUuugucggauGACCCGUGCGaaCGCGc -3'
miRNA:   3'- guCGUGGUACA---------CUGGGCACGC--GUGCu -5'
14516 3' -56.9 NC_003521.1 + 78457 0.69 0.8262
Target:  5'- uCGGCGCgGcUGggaacgcGGCCCG-GCGCGCGAc -3'
miRNA:   3'- -GUCGUGgU-ACa------CUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 115558 0.68 0.849214
Target:  5'- gAGCGCCGUGcugcgcggacguUGAucucgccCCCGUGCGCGuCGu -3'
miRNA:   3'- gUCGUGGUAC------------ACU-------GGGCACGCGU-GCu -5'
14516 3' -56.9 NC_003521.1 + 86811 0.73 0.620148
Target:  5'- -uGCACCAggugcUGcgGACCCGUGCGUGCu- -3'
miRNA:   3'- guCGUGGU-----ACa-CUGGGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 17667 0.71 0.718298
Target:  5'- gGGCACCAcgGUGGCCC-UGCGUAaccCGGc -3'
miRNA:   3'- gUCGUGGUa-CACUGGGcACGCGU---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.